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Bump galaxy packages to 22.05 #1275

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merged 13 commits into from
Feb 10, 2023
Merged

Bump galaxy packages to 22.05 #1275

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da9aad0
bump galaxy packages to 22.05
bernt-matthias Oct 4, 2022
f11f01a
skip 22.9
bernt-matthias Nov 28, 2022
bfeda53
Test aginst dev packages
mvdbeek Dec 8, 2022
b6ed654
Fixes for 22.5
mvdbeek Dec 8, 2022
e58bc7d
Update planemo/galaxy/config.py
bernt-matthias Dec 9, 2022
8e7896f
fix linter issue
bernt-matthias Dec 9, 2022
92ec50d
Rename configuration option removed in tox 4.0
nsoranzo Dec 9, 2022
f5bfee5
Adapt to extra element returned by parse_requirements_and_containers
mvdbeek Jan 30, 2023
5ec70f3
Run black 23
mvdbeek Feb 8, 2023
2984d43
Fix lower-bound for galaxy packages
mvdbeek Feb 9, 2023
94fab9f
And again
mvdbeek Feb 9, 2023
b69e720
Update requirements.txt
mvdbeek Feb 10, 2023
5992585
Update requirements.txt
mvdbeek Feb 10, 2023
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2 changes: 1 addition & 1 deletion planemo/galaxy/config.py
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Expand Up @@ -26,7 +26,7 @@
TYPE_CHECKING,
)

from galaxy.containers.docker_model import DockerVolume
from galaxy.tool_util.deps.container_volums import DockerVolume
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from galaxy.tool_util.deps import docker_util
from galaxy.util.commands import argv_to_str
from packaging.version import parse as parse_version
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5 changes: 2 additions & 3 deletions requirements.txt
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Expand Up @@ -3,9 +3,8 @@ bioblend>=1.0.0
click!=8.0.2
cwltool>=1.0.20191225192155
ephemeris>=0.10.3
galaxy-containers<22.5
galaxy-tool-util>=21.1.1,<22.5
galaxy-util>=20.5.0,<22.5
galaxy-tool-util>=22.5.0.dev0,<23.0
galaxy-util[template]>=22.5.0.dev0,<23.0
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glob2
gxformat2>=0.14.0
h5py
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