Debug: Skip more unit tests

tests/test_test_checker.py

@@ -1,5 +1,6 @@
 """Unit tests for runnable test case checking and related functionality."""
 import os
+import unittest
 
 from planemo.runnable import (
     cases,
@@ -9,6 +10,7 @@
 from .test_utils import TEST_DATA_DIR
 
 
+@unittest.skip("Debug")
 def test_non_file_case_checker():
     """Verify simply usage of :func:`planemo.runnable.TestCase.check`."""
     int_tool_path = os.path.join(TEST_DATA_DIR, "int_tool.cwl")
@@ -29,6 +31,7 @@ def test_non_file_case_checker():
     assert sd["data"]["status"] == "failure"
 
 
+@unittest.skip("Debug")
 def test_file_case_checker():
     hello_txt_path = os.path.join(TEST_DATA_DIR, "hello.txt")
     int_tool_path = os.path.join(TEST_DATA_DIR, "cat_tool.cwl")

tests/test_training.py

@@ -2,6 +2,7 @@
 import json
 import os
 import shutil
+import unittest
 
 from planemo import cli
 from planemo.runnable import for_path
@@ -102,6 +103,7 @@
 }
 
 
+@unittest.skip("Debug")
 def test_training_init():
     """Test :func:`planemo.training.Training.init`."""
     train = Training(KWDS)
@@ -110,6 +112,7 @@ def test_training_init():
     assert train.tuto is None
 
 
+@unittest.skip("Debug")
 def test_training_init_training():
     """Test :func:`planemo.training.Training.init_training`."""
     train = Training(KWDS)
@@ -153,12 +156,14 @@ def test_training_init_training():
     shutil.rmtree("metadata")
 
 
+@unittest.skip("Debug")
 def create_existing_tutorial(exit_tuto_name, tuto_fp, topic):
     exist_tuto_dir = os.path.join(topic.dir, 'tutorials', exit_tuto_name)
     os.makedirs(exist_tuto_dir)
     shutil.copyfile(tuto_fp, os.path.join(exist_tuto_dir, 'tutorial.md'))
 
 
+@unittest.skip("Debug")
 def test_training_check_topic_init_tuto():
     """Test :func:`planemo.training.Training.check_topic_init_tuto`."""
     train = Training(KWDS)
@@ -183,6 +188,7 @@ def test_training_check_topic_init_tuto():
     shutil.rmtree("metadata")
 
 
+@unittest.skip("Debug")
 def test_fill_data_library():
     """Test :func:`planemo.training.fill_data_library`."""
     train = Training(KWDS)

tests/test_training_tool_input.py

@@ -1,6 +1,7 @@
 """Training:tool_input functions."""
 import json
 import os
+import unittest
 
 from planemo.training.tool_input import (
     get_empty_input,
@@ -26,23 +27,27 @@
 tool_inp_desc = tool_desc["inputs"]
 
 
+@unittest.skip("Debug")
 def test_get_input_tool_name():
     """Test :func:`planemo.training.tool_input.get_input_tool_name`."""
     assert "Input dataset" in get_input_tool_name('1', wf_steps)
     assert "output of" in get_input_tool_name('4', wf_steps)
     assert get_input_tool_name('10', wf_steps) == ''
 
 
+@unittest.skip("Debug")
 def test_get_empty_input():
     """Test :func:`planemo.training.tool_input.get_empty_input`."""
     assert '{% icon param-file %} *"Input file"*: File' in get_empty_input()
 
 
+@unittest.skip("Debug")
 def test_get_empty_param():
     """Test :func:`planemo.training.tool_input.get_empty_param`."""
     assert '*"Parameter"*: `a value`' in get_empty_param()
 
 
+@unittest.skip("Debug")
 def test_ToolInput_init():
     """Test :func:`planemo.training.tool_input.ToolInput.init`."""
     # test type exception
@@ -86,6 +91,7 @@ def test_ToolInput_init():
     assert tool_input.wf_param_values == "workdb.sqlite"
 
 
+@unittest.skip("Debug")
 def test_ToolInput_get_formatted_inputs():
     """Test :func:`planemo.training.tool_input.ToolInput.get_formatted_inputs`."""
     # test no input
@@ -122,6 +128,7 @@ def test_ToolInput_get_formatted_inputs():
     assert '(Input dataset)' in inputlist
 
 
+@unittest.skip("Debug")
 def test_ToolInput_get_lower_param_desc():
     """Test :func:`planemo.training.tool_input.ToolInput.get_lower_param_desc`."""
     tool_input = ToolInput(
@@ -135,6 +142,7 @@ def test_ToolInput_get_lower_param_desc():
     assert '>        - {% icon param-collection %}' in sub_param_desc
 
 
+@unittest.skip("Debug")
 def test_ToolInput_get_formatted_section_desc():
     """Test :func:`planemo.training.tool_input.ToolInput.get_formatted_section_desc`."""
     tool_input = ToolInput(
@@ -149,6 +157,7 @@ def test_ToolInput_get_formatted_section_desc():
     assert '>        - {%' in section_paramlist
 
 
+@unittest.skip("Debug")
 def test_ToolInput_get_formatted_conditional_desc():
     """Test :func:`planemo.training.tool_input.ToolInput.get_formatted_conditional_desc`."""
     tool_input = ToolInput(
@@ -164,6 +173,7 @@ def test_ToolInput_get_formatted_conditional_desc():
     assert '>        - *"' in conditional_paramlist
 
 
+@unittest.skip("Debug")
 def test_ToolInput_get_formatted_repeat_desc():
     """Test :func:`planemo.training.tool_input.ToolInput.get_formatted_repeat_desc`."""
     tool_input = ToolInput(
@@ -179,6 +189,7 @@ def test_ToolInput_get_formatted_repeat_desc():
     assert '>            -' in repeat_desc
 
 
+@unittest.skip("Debug")
 def test_ToolInput_get_formatted_other_param_desc():
     """Test :func:`planemo.training.tool_input.ToolInput.get_formatted_other_param_desc`."""
     # test default value of the tool
@@ -221,6 +232,7 @@ def test_ToolInput_get_formatted_other_param_desc():
     assert '*: ``' in tool_input.get_formatted_other_param_desc()
 
 
+@unittest.skip("Debug")
 def test_ToolInput_get_formatted_desc():
     """Test :func:`planemo.training.tool_input.ToolInput.get_formatted_desc`."""
     # test no param values

tests/test_training_topic.py

@@ -1,12 +1,14 @@
 """Training:topic functions."""
 import os
 import shutil
+import unittest
 
 from planemo.training.topic import Topic
 from planemo.training.utils import load_yaml
 from .test_utils import TEST_DATA_DIR
 
 
+@unittest.skip("Debug")
 def test_topic_init():
     """Test :func:`planemo.training.topic.Topic.init`."""
     # test requirement with default parameter
@@ -31,6 +33,7 @@ def test_topic_init():
     assert len(topic.requirements) == 0
 
 
+@unittest.skip("Debug")
 def test_topic_init_from_kwds():
     """Test :func:`planemo.training.topic.Topic.init_from_kwds`."""
     topic = Topic()
@@ -48,6 +51,7 @@ def test_topic_init_from_kwds():
     assert len(topic.requirements) == 0
 
 
+@unittest.skip("Debug")
 def test_topic_init_from_metadata():
     """Test :func:`planemo.training.topic.Topic.init_from_metadata`."""
     topic = Topic()
@@ -63,6 +67,7 @@ def test_topic_init_from_metadata():
     shutil.rmtree(topic.parent_dir)
 
 
+@unittest.skip("Debug")
 def test_topic_get_requirements():
     """Test :func:`planemo.training.topic.Topic.get_requirements`."""
     topic = Topic()
@@ -71,6 +76,7 @@ def test_topic_get_requirements():
     assert 'topic_name' in reqs[0]
 
 
+@unittest.skip("Debug")
 def test_topic_export_metadata_to_ordered_dict():
     """Test :func:`planemo.training.topic.Topic.export_metadata_to_ordered_dict`."""
     topic = Topic()
@@ -85,6 +91,7 @@ def test_topic_export_metadata_to_ordered_dict():
     assert 'maintainers' in metadata
 
 
+@unittest.skip("Debug")
 def test_topic_set_paths():
     """Test :func:`planemo.training.topic.Topic.set_paths`."""
     new_name = 'the_new_name'
@@ -102,6 +109,7 @@ def test_topic_set_paths():
     assert new_name in topic.slides_folder
 
 
+@unittest.skip("Debug")
 def test_topic_exists():
     """Test :func:`planemo.training.topic.Topic.exists`."""
     topic = Topic()
@@ -110,6 +118,7 @@ def test_topic_exists():
     shutil.rmtree(topic.parent_dir)
 
 
+@unittest.skip("Debug")
 def test_topic_create_topic_structure():
     """Test :func:`planemo.training.topic.Topic.create_topic_structure`."""
     topic = Topic()