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1.4.0 Release #64

Merged
merged 59 commits into from
Dec 14, 2021
Merged

1.4.0 Release #64

merged 59 commits into from
Dec 14, 2021

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ksuderman
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Preparing for the 1.4.0 release.

bcarr15 and others added 30 commits October 25, 2021 00:38
@bcarr15
Instance shortcuts profile example
745cc55
@bcarr15
Merge before pull
1bcafb8
@bcarr15
Bootstrap script - still testing/fixing
50b8c0d
@bcarr15
Change to wait_for func
255ee86
@bcarr15
Merge branch 'ksuderman:dev' into dev
d0269fa
@bcarr15
Fixed history export waiting and loop
713741b
@bcarr15
Issue with collecting export URL
8209159
@bcarr15
Resolve merge issue
b045e6e
@bcarr15
Merge changes
bfcfde9
@bcarr15
Fix conflicts
aee58b8
@bcarr15
Use abm as lib instead of subprocess
7a3085a
@afgane
Fix typo
c88b554
@ksuderman
Merge pull request #46 from afgane/patch-2
7338252 
Fix typo
@bcarr15
abm import adjusted, add folder with test config
f2c63b3
@ksuderman
Merge pull request #47 from aTrashPanda/bootstrap
f0ef352 
Bootstrap update - import adjustment
@ksuderman
Merge branch 'dev' into bootstrap
aee5663
@ksuderman
Start refactoring
2525346
@ksuderman
Moved abm lib. Refactored abm-bootstrap into stand-alone script
8638d37
@ksuderman
Merge pull request #49 from ksuderman/dev
537c62e 
Dev
@ksuderman
Refactory abm-bootstrap into bootstrap.py
d829244
@ksuderman
Merge pull request #50 from ksuderman/benchmark
f905c5b 
Benchmarking code ready to test
@ksuderman
Add common.set_active_profile()
9a75e8a
@ksuderman
Merge branch 'dev' into bootstrap
94b2819
@ksuderman
Merge branch 'bootstrap' of github.com:ksuderman/bioblend-scripts int…
7a0b6cc 
…o bootstrap
@ksuderman
Trying to fix module/library problem
2a06779
@ksuderman
Getting ready for merge
f1f936a
@ksuderman
Refactor packages and modules
47bd984
@ksuderman
Merge pull request #51 from ksuderman/packages
6cc575f 
Packages
@ksuderman
Comments and todo items
a523476
@ksuderman
Merge pull request #52 from ksuderman/bootstrap
da98767 
Bootstrap
ksuderman and others added 27 commits December 9, 2021 13:51
@ksuderman
Fixing modules
1a41d3d
@ksuderman
Add some TODO items.
c361838
@bcarr15
Merge branch 'bootstrap' of https://github.com/aTrashPanda/bioblend-s…
f830f82 
…cripts into bootstrap
@bcarr15
Load history and workflow ID values from a yaml configuration file
358a409
@ksuderman
Merge pull request #55 from aTrashPanda/bootstrap
2b4141f 
Bootstrap: fixes #53
@ksuderman
Merge pull request #57 from ksuderman/benchmark
7081ed0 
Benchmark
@bcarr15
Check validate return code to see if upload needed
7fcb7e8
@ksuderman
Merge pull request #58 from ksuderman/dev
776181c 
Dev
@bcarr15
Merge branch 'ksuderman:bootstrap' into bootstrap
df4b87c
@bcarr15
Merge pull request #59 from aTrashPanda/bootstrap
87ee8e9 
Bootstrap: Check validate return code to see if upload needed
@ksuderman
Return the job id from history.import
eccdd68
@bcarr15
Merge branch 'dev' into bootstrap
e1c821b
@bcarr15
Merge branch 'bootstrap' of https://github.com/aTrashPanda/bioblend-s…
9c27f6f 
…cripts into bootstrap
@ksuderman
Make history._import wait for import job
887faea
@bcarr15
Command line parse adjusted
4a77359
@bcarr15
Merge branch 'dev' into bootstrap
9274895
@bcarr15
Fixed error message for config yaml not found
ad0f424
@bcarr15
Fixed TODO for cmd line parsing
a0d3a7b
@bcarr15
Random directory for workflow downloads
685c105
@bcarr15
Merge pull request #61 from aTrashPanda/bootstrap
d3ca267 
Bootstrap: Fixed issue #60 (cmd line parsing)
@ksuderman
Refactor benchmark config
0d08140
@ksuderman
Fix experiment configuration format
ee21819
@ksuderman
Update wait for script to use abm.py
9516385
@ksuderman
Bump to version 1.4.0
90409ff
@ksuderman
Code clean up
7959474
@ksuderman
Merge pull request #62 from galaxyproject/bootstrap
297c096 
Bootstrap
@ksuderman
Remove stale directory
a2b23a4
@ksuderman ksuderman merged commit 1673b6f into master Dec 14, 2021
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3 participants
@ksuderman @bcarr15 @afgane