Merge pull request #236 from galaxyproject/235-remap-job-rerun

Job rerun --remap
galaxyproject · Aug 14, 2023 · 0cea84c · 0cea84c
2 parents eb7cdab + 70d6ef2
commit 0cea84c
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Showing 2 changed files with 9 additions and 2 deletions.
diff --git a/abm/lib/experiment.py b/abm/lib/experiment.py
@@ -135,7 +135,7 @@ def summarize(context: Context, args: list):
             make_row = make_model_row
             header_row = "job_id,tool_id,tool_version,state,memory.max_usage_in_bytes,cpuacct.usage,process_count,galaxy_slots,runtime_seconds,ref_data_size,input_data_size_1,input_data_size_2"
         else:
-            print(f"Input dir {arg}")
+            # print(f"Input dir {arg}")
             input_dirs.append(arg)
 
     if len(input_dirs) == 0:

diff --git a/abm/lib/job.py b/abm/lib/job.py
@@ -153,9 +153,16 @@ def problems(context: Context, args: list):
 
 
 def rerun(context: Context, args: list):
+    remap = False
+    if '-r' in args:
+        remap = True
+        args.remove('-r')
+    if '--remap' in args:
+        remap = True
+        args.remove('--remap')
     if len(args) == 0:
         print("ERROR: no job ID provided")
         return
     gi = connect(context)
-    result = gi.jobs.rerun_job(args[0], remap=True)
+    result = gi.jobs.rerun_job(args[0], remap=remap)
     print_json(result)