Update pydantic to 2.10.3

[nsoranzo]

Also:

• Fix new mypy errors
• Rebuild client API schema

How to test the changes?

(Select all options that apply)

• I've included appropriate automated tests.
• This is a refactoring of components with existing test coverage.
• Instructions for manual testing are as follows:
  1. [add testing steps and prerequisites here if you didn't write automated tests covering all your changes]

License

• I agree to license these and all my past contributions to the core galaxy codebase under the MIT license.

[mvdbeek]

Thanks!

[mvdbeek]

this looks related ? Should probably just be == instead of is ?

    def validate_create_action(ro_crate: ROCrate):
        workflow = ro_crate.mainEntity
        actions = [_ for _ in ro_crate.contextual_entities if "CreateAction" in _.type]
        assert len(actions) == 1
        wf_action = actions[0]
        assert wf_action["instrument"]
        assert wf_action["instrument"] is workflow
        wf_objects = wf_action["object"]
        wf_results = wf_action["result"]
        assert len(wf_objects) == 1
        assert len(wf_results) == 1
        for entity in wf_results:
            if entity.id.endswith(".txt"):
                assert "File" in entity.type
                wf_output_file = entity
                assert wf_output_file["encodingFormat"] == "text/plain"
>               assert wf_output_file["exampleOfWork"] is workflow["output"][0]
E               AssertionError: assert '#b289c404-2508-4861-b4dd-f3c87c429734' is <b289c404-2508-4861-b4dd-f3c87c429734 FormalParameter>

[nsoranzo]

this looks related ? Should probably just be == instead of is ?

It's not related, it's due to ResearchObject/ro-crate-py#204 and started happening once rocrate 0.12.0 was released (you can see it affects only the test_galaxy_packages build on py313 since the new rocrate requires python>=3.9).

I had a look last week but couldn't find an easy fix, I think it should be fixed on the rocrate side.