[24.1] Don't use async def where not appropriate

lib/galaxy/webapps/galaxy/api/pages.py

@@ -103,7 +103,7 @@ class FastAPIPages:
         summary="Lists all Pages viewable by the user.",
         response_description="A list with summary page information.",
     )
-    async def index(
+    def index(
         self,
         response: Response,
         trans: ProvidesUserContext = DependsOnTrans,
@@ -153,7 +153,7 @@ def create(
         summary="Marks the specific Page as deleted.",
         status_code=status.HTTP_204_NO_CONTENT,
     )
-    async def delete(
+    def delete(
         self,
         id: PageIdPathParam,
         trans: ProvidesUserContext = DependsOnTrans,
@@ -167,7 +167,7 @@ async def delete(
         summary="Undelete the specific Page.",
         status_code=status.HTTP_204_NO_CONTENT,
     )
-    async def undelete(
+    def undelete(
         self,
         id: PageIdPathParam,
         trans: ProvidesUserContext = DependsOnTrans,
@@ -188,7 +188,7 @@ async def undelete(
             501: {"description": "PDF conversion service not available."},
         },
     )
-    async def show_pdf(
+    def show_pdf(
         self,
         id: PageIdPathParam,
         trans: ProvidesUserContext = DependsOnTrans,
@@ -210,7 +210,7 @@ async def show_pdf(
             501: {"description": "PDF conversion service not available."},
         },
     )
-    async def prepare_pdf(
+    def prepare_pdf(
         self,
         id: PageIdPathParam,
         trans: ProvidesUserContext = DependsOnTrans,
@@ -226,7 +226,7 @@ async def prepare_pdf(
         summary="Return a page summary and the content of the last revision.",
         response_description="The page summary information.",
     )
-    async def show(
+    def show(
         self,
         id: PageIdPathParam,
         trans: ProvidesUserContext = DependsOnTrans,

lib/galaxy/webapps/galaxy/api/remote_files.py

@@ -128,7 +128,7 @@ class FastAPIRemoteFiles:
         deprecated=True,
         summary="Displays remote files available to the user. Please use /api/remote_files instead.",
     )
-    async def index(
+    def index(
         self,
         response: Response,
         user_ctx: ProvidesUserContext = DependsOnTrans,
@@ -157,7 +157,7 @@ async def index(
         summary="Display plugin information for each of the gxfiles:// URI targets available.",
         response_description="A list with details about each plugin.",
     )
-    async def plugins(
+    def plugins(
         self,
         user_ctx: ProvidesUserContext = DependsOnTrans,
         browsable_only: Annotated[Optional[bool], BrowsableQueryParam] = True,
@@ -176,7 +176,7 @@ async def plugins(
         "/api/remote_files",
         summary="Creates a new entry (directory/record) on the remote files source.",
     )
-    async def create_entry(
+    def create_entry(
         self,
         user_ctx: ProvidesUserContext = DependsOnTrans,
         payload: CreateEntryPayload = Body(

lib/galaxy/webapps/galaxy/api/tool_data.py

@@ -67,7 +67,7 @@ async def index(self) -> ToolDataEntryList:
         summary="Import a data manager bundle",
         require_admin=True,
     )
-    async def create(
+    def create(
         self, tool_data_file_path: Optional[str] = None, import_bundle_model: ImportToolDataBundle = Body(...)
     ) -> AsyncTaskResultSummary:
         source = import_bundle_model.source
@@ -91,7 +91,7 @@ async def show(self, table_name: str = ToolDataTableName) -> ToolDataDetails:
         response_description="A description of the reloaded data table and its content",
         require_admin=True,
     )
-    async def reload(self, table_name: str = ToolDataTableName) -> ToolDataDetails:
+    def reload(self, table_name: str = ToolDataTableName) -> ToolDataDetails:
         """Reloads a data table and return its details."""
         return self.tool_data_manager.reload(table_name)
 
@@ -116,7 +116,7 @@ async def show_field(
         response_class=GalaxyFileResponse,
         require_admin=True,
     )
-    async def download_field_file(
+    def download_field_file(
         self,
         table_name: str = ToolDataTableName,
         field_name: str = ToolDataTableFieldName,
@@ -136,7 +136,7 @@ async def download_field_file(
         response_description="A description of the affected data table and its content",
         require_admin=True,
     )
-    async def delete(
+    def delete(
         self,
         payload: ToolDataItem,
         table_name: str = ToolDataTableName,

lib/galaxy/webapps/galaxy/api/tools.py

@@ -73,35 +73,37 @@ class JsonApiRoute(APIContentTypeRoute):
 FetchDataForm = as_form(FetchDataFormPayload)
 
 
+async def get_files(request: Request, files: Optional[List[UploadFile]] = None):
+    # FastAPI's UploadFile is a very light wrapper around starlette's UploadFile
+    files2: List[StarletteUploadFile] = cast(List[StarletteUploadFile], files or [])
+    if not files2:
+        data = await request.form()
+        for value in data.values():
+            if isinstance(value, StarletteUploadFile):
+                files2.append(value)
+    return files2
+
+
 @router.cbv
 class FetchTools:
     service: ToolsService = depends(ToolsService)
 
     @router.post("/api/tools/fetch", summary="Upload files to Galaxy", route_class_override=JsonApiRoute)
-    async def fetch_json(self, payload: FetchDataPayload = Body(...), trans: ProvidesHistoryContext = DependsOnTrans):
+    def fetch_json(self, payload: FetchDataPayload = Body(...), trans: ProvidesHistoryContext = DependsOnTrans):
         return self.service.create_fetch(trans, payload)
 
     @router.post(
         "/api/tools/fetch",
         summary="Upload files to Galaxy",
         route_class_override=FormDataApiRoute,
     )
-    async def fetch_form(
+    def fetch_form(
         self,
-        request: Request,
         payload: FetchDataFormPayload = Depends(FetchDataForm.as_form),
-        files: Optional[List[UploadFile]] = None,
         trans: ProvidesHistoryContext = DependsOnTrans,
+        files: List[StarletteUploadFile] = Depends(get_files),
     ):
-        files2: List[StarletteUploadFile] = cast(List[StarletteUploadFile], files or [])
-
-        # FastAPI's UploadFile is a very light wrapper around starlette's UploadFile
-        if not files2:
-            data = await request.form()
-            for value in data.values():
-                if isinstance(value, StarletteUploadFile):
-                    files2.append(value)
-        return self.service.create_fetch(trans, payload, files2)
+        return self.service.create_fetch(trans, payload, files)
 
 
 class ToolsController(BaseGalaxyAPIController, UsesVisualizationMixin):

lib/galaxy/webapps/galaxy/api/visualizations.py

@@ -120,7 +120,7 @@ class FastAPIVisualizations:
         "/api/visualizations",
         summary="Returns visualizations for the current user.",
     )
-    async def index(
+    def index(
         self,
         response: Response,
         trans: ProvidesUserContext = DependsOnTrans,