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Samples and defaults for Conda mapping.
- Map R to r-base and blast+ to blast for conda dependencies. - Add sample environment modules file showing off the new mapping feature. - Add integration test case to verify the default conda mapping (R -> r-base in particular).
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# See $GALAXY_ROOT/lib/galaxy/tools/deps/default_conda_mapping.yml for example mapping - | ||
# additional site-specific mappings can be added to config/conda_mapping.yml. |
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- from: R | ||
to: r-base | ||
- from: blast+ | ||
to: blast | ||
|
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<tool id="legacy_R" name="legacy_R" version="0.1.0"> | ||
<command detect_errors="exit_code"><![CDATA[ | ||
R --version > $out_file1 | ||
]]></command> | ||
<requirements> | ||
<requirement type="package">R</requirement> | ||
</requirements> | ||
<inputs> | ||
<param name="input1" type="text" value="The value" /> | ||
</inputs> | ||
<outputs> | ||
<data name="out_file1" format="txt" /> | ||
</outputs> | ||
</tool> |
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