Re-add uncategorized

galaxyproject · Oct 30, 2020 · 6b49ed4 · 6b49ed4
1 parent 2c4f039
commit 6b49ed4
Showing 1 changed file with 5 additions and 8 deletions.
diff --git a/lib/galaxy/tools/toolbox/base.py b/lib/galaxy/tools/toolbox/base.py
@@ -528,7 +528,7 @@ def _load_tool_panel_edam(self):
                         if tool_id in self._tools_by_id:
                             for term, label in self._get_edam_sec(section_val):
                                 if term == 'uncategorized':
-                                    uncategorized.append((tool_id, key, val, val.name))
+                                    uncategorized.append((tool_id, key, section_val, val.name))
                                 else:
                                     for path in self.edam[term]['path']:
                                         if len(path) == 1:
@@ -551,10 +551,6 @@ def _load_tool_panel_edam(self):
                             log.debug(f"Loaded workflow: {workflow_id} {workflow.name}")
         log.debug("Loading tool panel finished %s", execution_timer)
 
-        # print(operations.keys())
-        # print([self._sort_edam_key(x) for x in operations.keys()])
-        # print(sorted(operations.keys(), lambda x: self._sort_edam_key(x)))
-
         for term in sorted(operations.keys(), key=lambda x: self._sort_edam_key(x)):
             if len(operations[term].keys()) == 0:
                 continue
@@ -584,9 +580,10 @@ def _load_tool_panel_edam(self):
                 self._integrated_section_by_tool[tool_id] = key, val_name
 
         section = self._get_section('uncategorized', 'Uncategorized')
-        # for (tool_id, key, val, val_name) in uncategorized:
-            # self.__add_tool_to_tool_panel(val, section, section=True)
-            # self._integrated_section_by_tool[tool_id] = key, val_name
+        for (tool_id, key, val, val_name) in uncategorized:
+            print(tool_id, key, val, val_name)
+            self.__add_tool_to_tool_panel(val, section, section=True)
+            self._integrated_section_by_tool[tool_id] = key, val_name
 
     def _sort_edam_key(self, x):
         if x in ('operation_0004', 'topic_0003'):