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[Workaround] Docker-in-Docker for mulled containers #58

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almahmoud
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This is not necessarily meant to be merged, but a useful workaround until we figure out how to automate the process of finding combinations of tools not in biocontainers.
Having a docker-in-docker container will allow the job containers to build mulled containers on-the-fly and use them when the images are not found in biocontainers.

@almahmoud almahmoud changed the title [Workaround] [Workaround] Docker-in-Docker for mulled containers Oct 7, 2019
@nuwang
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nuwang commented Oct 8, 2019

This is a far more compact solution than I expected. Useful to have this PR around for future reference.

Also linking in this new PR that will allow us to identify the broken containers and fix them at the source: galaxyproject/galaxy#8741

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