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Merge external FRASER counts#169

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c-mertes wants to merge 11 commits intodevgagneurlab/drop:devfrom merge_exFRASER_countsgagneurlab/drop:merge_exFRASER_countsCopy head branch name to clipboard

+380-276

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Commits on Feb 10, 2021

• initial merge of external splicing counts for FRASER

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  86a6be2

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• fix download and add more test cases

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  2cce9ae

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• fix test

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• fix wget download and heatmap plotting

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Commits on Feb 22, 2021

• major revision of the aberrant splicing pipeline

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• fix setAutoBPPARAM function and some cleanup

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  7a4e982

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• force to write HDF5 file

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Commits on Feb 23, 2021

• fix knitr/tidyr loading and force to write HDF5

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Commits on Feb 24, 2021

• remove the dependency on the count matrices as they get rewritten

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Commits on Jul 14, 2021

• merge dev into merge_exFRASER_counts branch.

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Commits on Aug 11, 2021

• Merge branch 'dev' into merge_exFRASER_counts

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