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refactor(build): change setup.py to pyproject.toml and improve cython
setup
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,63 @@ | ||
| [build-system] | ||
| requires = ["setuptools", "Cython"] | ||
| build-backend = "setuptools.build_meta" | ||
|
|
||
| [tool.setuptools.packages.find] | ||
| where = ["."] | ||
| exclude = ["sphinx*"] | ||
|
|
||
| [tool.setuptools.dynamic] | ||
| version = {file = "omas/version"} | ||
|
|
||
| [project] | ||
| name = 'omas' | ||
| dynamic = ["version"] | ||
| description = 'Ordered Multidimensional Array Structures' | ||
| authors = [ | ||
| {name = 'Orso Meneghini', email = '[email protected]'}, | ||
| ] | ||
| classifiers = [ | ||
| 'Development Status :: 5 - Production/Stable', | ||
| 'Programming Language :: Python', | ||
| 'Programming Language :: Python :: 3', | ||
| 'Programming Language :: Python :: 3 :: Only', | ||
| 'License :: OSI Approved :: MIT License', | ||
| ] | ||
| keywords = ["integrated modeling", "OMFIT", "IMAS", "ITER"] | ||
|
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||
| requires-python = '>=3.6' | ||
| dependencies = [ | ||
| 'numpy>=1.16.1', | ||
| 'uncertainties', | ||
| 'pint', | ||
| 'netCDF4', | ||
| 'boto3', | ||
| 'matplotlib', | ||
| 'scipy', | ||
| 'h5py', | ||
| 'pymongo', | ||
| 'dnspython', | ||
| 'xmltodict', | ||
| 'xarray', | ||
| 'setuptools>=41.2', | ||
| 'tqdm', | ||
| ] | ||
| readme="README.md" | ||
|
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||
| [project.urls] | ||
| Homepage = 'https://gafusion.github.io/omas' | ||
| Source = 'https://github.com/gafusion/omas' | ||
|
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||
| [project.optional-dependencies] | ||
| machine = [ | ||
| 'omfit_classes', | ||
| 'pexpect', | ||
| 'fortranformat', | ||
| 'pygacode', | ||
| ] | ||
| hdc = ['pyhdc'] | ||
| imas = ['imas'] | ||
| uda = ['pyuda'] | ||
| build_sdist = ['build'] | ||
| build_structures = ['bs4'] | ||
| build_documentation = ['Sphinx', 'sphinx-bootstrap-theme', 'sphinx-gallery', 'Pillow'] |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,128 +1,6 @@ | ||
| import os | ||
| import sys | ||
| import glob | ||
| import subprocess | ||
|
|
||
| install_requires = [ | ||
| 'numpy>=1.16.1', | ||
| 'uncertainties', | ||
| 'pint', | ||
| 'netCDF4', | ||
| 'boto3', | ||
| 'matplotlib', | ||
| 'scipy', | ||
| 'h5py', | ||
| 'pymongo', | ||
| 'dnspython', | ||
| 'xmltodict', | ||
| 'xarray', | ||
| 'setuptools>=41.2', | ||
| 'tqdm', | ||
| 'Cython', | ||
| ] | ||
|
|
||
| extras_require = { | ||
| 'machine': [ | ||
| 'omfit_classes', | ||
| 'pexpect', | ||
| 'fortranformat', | ||
| 'pygacode', | ||
| ], | ||
| 'hdc': ['pyhdc'], | ||
| 'imas': ['imas'], | ||
| 'uda': ['pyuda'], | ||
| 'build_structures': ['bs4'], | ||
| 'build_documentation': ['Sphinx', 'sphinx-bootstrap-theme', 'sphinx-gallery', 'Pillow'], | ||
| } | ||
|
|
||
| # Add .json IMAS structure files to the package | ||
| here = os.path.abspath(os.path.split(__file__)[0]) + os.sep | ||
|
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||
| # Automatically generate requirement.txt file if this is the OMAS repo and requirements.txt is missing | ||
| if os.path.exists(here + '.git') and not os.path.exists(here + 'requirements.txt'): | ||
| with open(here + 'requirements.txt', 'w') as f: | ||
| f.write('# Do not edit this file by hand, operate on setup.py instead\n#\n') | ||
| f.write('# usage: pip install -r requirements.txt\n\n') | ||
| for item in install_requires: | ||
| f.write(item.ljust(25) + '# required\n') | ||
| for requirement in extras_require: | ||
| f.write('\n') | ||
| for item in extras_require[requirement]: | ||
| f.write('# ' + item.ljust(25) + '# %s\n' % requirement) | ||
|
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| packages = ['omas', 'omas.examples', 'omas.samples', 'omas.tests', 'omas.utilities'] | ||
| package_data = { | ||
| 'omas': ['*.py', '*.pyx', 'version'], | ||
| 'omas.examples': ['*.py'], | ||
| 'omas.samples': ['*'], | ||
| 'omas.tests': ['*.py'], | ||
| 'omas.utilities': ['*.py'], | ||
| } | ||
|
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||
| machine_mappings_dir = here + os.sep + 'omas' + os.sep + 'machine_mappings' | ||
| for item in glob.glob(os.sep.join([here, 'omas', 'imas_structures', '*'])): | ||
| packages.append('omas.imas_structures.' + os.path.split(item)[1]) | ||
| package_data['omas.imas_structures.' + os.path.split(item)[1]] = ['*.json'] | ||
| for retry in [1, 2]: | ||
| if os.path.exists(here + '.git') and retry == 1: | ||
| try: | ||
| tmp = f'pushd {machine_mappings_dir}; git ls-files; popd' | ||
| machine_mappings_files = subprocess.check_output(tmp, shell=True).decode("utf-8").strip().split('\n')[2:-1] | ||
| machine_mappings_files = ['omas' + os.sep + 'machine_mappings' + os.sep + k for k in machine_mappings_files] | ||
| except subprocess.CalledProcessError: | ||
| pass | ||
| else: | ||
| print("setup.py machine_mappings_files based on git") | ||
| break | ||
| else: | ||
| machine_mappings_files = [] | ||
| for root, subdirs, files in os.walk(machine_mappings_dir): | ||
| root = root[len(machine_mappings_dir) + 1 :] | ||
| for file in reversed(files): | ||
| machine_mappings_files.append('omas' + os.sep + 'machine_mappings' + os.sep + root + os.sep + file) | ||
| dirs = {os.path.dirname(file): [] for file in sorted(machine_mappings_files)} | ||
| for file in machine_mappings_files: | ||
| dirs[os.path.dirname(file)].append(os.path.basename(file)) | ||
| for dir in dirs: | ||
| packages.append(dir.replace('/', '.')) | ||
| package_data[dir.replace('/', '.')] = dirs[dir] | ||
|
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||
| long_description = ''' | ||
| OMAS is a Python library designed to simplify the interface of third-party codes with the `ITER <http://iter.org>`_ Integrated Modeling and Analysis Suite (`IMAS <https://confluence.iter.org/display/IMP>`_). | ||
| * It provides a **convenient Python API** | ||
| * capable of storing data with **different file/database formats** | ||
| * in a form that is **always compatible with the IMAS data model** | ||
| Mapping the physics codes I/O to the IMAS data model is done in third party Python codes such as the `OMFIT framework <https://omfit.io>`_. | ||
| ''' | ||
|
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||
| print() | ||
| print('INFO: optional dependencies:') | ||
| from pprint import pprint | ||
|
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||
| pprint(extras_require) | ||
| print() | ||
| print('INFO: run the `imports_check.py` script to quickly verify that all Python dependencies for OMAS are installed') | ||
| print() | ||
|
|
||
| from setuptools import setup | ||
| from setuptools import Extension, setup | ||
| from Cython.Build import cythonize | ||
|
|
||
| setup( | ||
| name='omas', | ||
| version=open(here + 'omas/version', 'r').read().strip(), | ||
| description='Ordered Multidimensional Array Structures', | ||
| url='https://gafusion.github.io/omas', | ||
| author='Orso Meneghini', | ||
| license='MIT', | ||
| classifiers=['License :: OSI Approved :: MIT License', 'Programming Language :: Python :: 3'], | ||
| keywords='integrated modeling OMFIT IMAS ITER', | ||
| long_description=long_description, | ||
| long_description_content_type='text/markdown', | ||
| packages=packages, | ||
| package_data=package_data, | ||
| install_requires=install_requires, | ||
| extras_require=extras_require, | ||
| ext_modules = cythonize("omas/omas_cython.pyx") | ||
| ) |