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Fix typos in alignment #914

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May 16, 2023
Merged

Fix typos in alignment #914

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4 changes: 2 additions & 2 deletions src/main/scala/com/fulcrumgenomics/alignment/Alignment.scala
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Original file line number Diff line number Diff line change
Expand Up @@ -402,8 +402,8 @@ case class Alignment(query: Array[Byte],
* @return a new [[Alignment]] with updated coordinates and cigar
*/
def subByQuery(start: Int, end: Int): Alignment = {
require(start >= queryStart && start <= queryEnd, "start is outside of aligned region of target sequence")
require(end >= queryStart && end <= queryEnd, "end is outside of aligned region of target sequence")
require(start >= queryStart && start <= queryEnd, "start is outside of aligned region of query sequence")
require(end >= queryStart && end <= queryEnd, "end is outside of aligned region of query sequence")
sub(start, end, this.queryStart, _.operator.consumesReadBases())
}

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