[bugfix] fix issue #858 in CallDuplexConsensusReads #864
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Fixes #858 where the AB strand single strand consensus read could have zero depth and all Ns, such that the consensus read produced has an aD value of zero but bD value > 0, causing issues in FilterConsensus Reads.
nh13
commented
Jul 27, 2022
src/main/scala/com/fulcrumgenomics/umi/DuplexConsensusCaller.scala
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Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## main #864 +/- ##
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+ Coverage 95.64% 95.66% +0.01%
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Files 125 125
Lines 7237 7239 +2
Branches 479 507 +28
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+ Hits 6922 6925 +3
+ Misses 315 314 -1
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Fixes #858 where the AB strand single strand consensus read could have
zero depth and all Ns, such that the consensus read produced has an aD
value of zero but bD value > 0, causing issues in FilterConsensus Reads.