Update Bams.scala

fulcrumgenomics · Jun 28, 2024 · fb3ce46 · fb3ce46
1 parent 8d31cf3
commit fb3ce46
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/scala/com/fulcrumgenomics/bam/Bams.scala b/src/main/scala/com/fulcrumgenomics/bam/Bams.scala
@@ -542,7 +542,7 @@ object Bams extends LazyLogging {
       "Input was not queryname sorted or query grouped, found: " +
         s"SO:${header.getSortOrder} GO:${header.getGroupOrder}" +
         Option(header.getAttribute("SS")).map(ss => f" SS:$ss").getOrElse("") +
-        f". Use `samtools sort -n -u in.bam | fgbio $toolName -i /dev/stdin`" +
+        f". Use `samtools sort -n in.bam | fgbio $toolName -i /dev/stdin`" +
         path.map(p => f"\nPath: $p").getOrElse("")
     )
   }