Update src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala

Co-authored-by: Nils Homer <[email protected]>
fulcrumgenomics · Jul 15, 2024 · 51369ba · 51369ba
1 parent e58a576
commit 51369ba
Showing 1 changed file with 8 additions and 6 deletions.
diff --git a/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala b/src/main/scala/com/fulcrumgenomics/umi/CopyUmiFromReadName.scala
@@ -71,12 +71,14 @@ class CopyUmiFromReadName
     val progress = new ProgressLogger(logger)
     source.foreach { rec =>
       progress.record(rec)
-      writer += Umis.copyUmiFromReadName(rec=rec, 
-                                         removeUmi=removeUmi,
-                                         fieldDelimiter=fieldDelimiter,
-                                         umiDelimiter=umiDelimiter,
-                                         rcPrefix=rcPrefix,
-                                         normalizeRcUmis=normalizeRcUmis)
+      writer += Umis.copyUmiFromReadName(
+        rec             = rec, 
+        removeUmi       = removeUmi,
+        fieldDelimiter  = fieldDelimiter,
+        umiDelimiter    = umiDelimiter,
+        rcPrefix        = rcPrefix,
+        normalizeRcUmis = normalizeRcUmis
+      )
     }
     progress.logLast()
     source.safelyClose()