ci: migrate ubuntu-latest to ubuntu-24.04 #1276

	name: unit tests

	on: [push, pull_request]

	jobs:
	test:
	runs-on: ubuntu-24.04
	environment: github-actions
	steps:
	- name: Checkout
	uses: actions/checkout@v2
	with:
	fetch-depth: 0
	lfs: true
	- name: Checkout LFS objects
	run: git lfs checkout
	- name: Setup Scala
	uses: olafurpg/setup-scala@v12
	with:
	java-version: [email protected]
	- name: Unit Tests
	run: \|
	set -e
	sbt +clean coverage +test && sbt coverageReport coverageAggregate && (find $HOME/.sbt -name ".lock" \| xargs rm) && (find $HOME/.ivy2 -name "ivydata-.properties" \| xargs rm)
	- name: Code Coverage
	uses: codecov/[email protected]
	with:
	token: ${{ secrets.CODECOV_TOKEN }}
	flags: unittests # optional
	fail_ci_if_error: true # optional (default = false)
	verbose: true # optional (default = false)
	- name: Cache .ivy2
	uses: actions/cache@v2
	with:
	path: ~/.ivy2
	key: ${{ runner.os }}-ivy2-${{ hashFiles('**/build.sbt') }}
	- name: Cache .sbt
	uses: actions/cache@v2
	with:
	path: ~/.sbt
	key: ${{ runner.os }}-sbt-${{ hashFiles('**/build.properties') }}
	release:
	if: github.repository == 'fulcrumgenomics/fgbio' && github.ref == 'refs/heads/main'

	needs: test
	runs-on: ubuntu-24.04
	environment: github-actions
	env:
	SONATYPE_USER: ${{ secrets.SONATYPE_USER }}
	SONATYPE_PASS: ${{ secrets.SONATYPE_PASS }}
	steps:
	- uses: actions/checkout@v2
	with:
	fetch-depth: 0
	- name: Setup Scala
	uses: olafurpg/setup-scala@v12
	with:
	java-version: [email protected]
	- name: Upload to Sonatype
	run: \|
	sbt +publish

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