Allow haploid GTs #1256
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: unit tests | |
| on: [push, pull_request] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| lfs: true | |
| - name: Checkout LFS objects | |
| run: git lfs checkout | |
| - name: Setup Scala | |
| uses: olafurpg/setup-scala@v12 | |
| with: | |
| java-version: [email protected] | |
| - name: Unit Tests | |
| run: | | |
| set -e | |
| sbt +clean coverage +test && sbt coverageReport coverageAggregate && (find $HOME/.sbt -name "*.lock" | xargs rm) && (find $HOME/.ivy2 -name "ivydata-*.properties" | xargs rm) | |
| - name: Code Coverage | |
| uses: codecov/[email protected] | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| flags: unittests # optional | |
| fail_ci_if_error: true # optional (default = false) | |
| verbose: true # optional (default = false) | |
| - name: Cache .ivy2 | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.ivy2 | |
| key: ${{ runner.os }}-ivy2-${{ hashFiles('**/build.sbt') }} | |
| - name: Cache .sbt | |
| uses: actions/cache@v2 | |
| with: | |
| path: ~/.sbt | |
| key: ${{ runner.os }}-sbt-${{ hashFiles('**/build.properties') }} | |
| release: | |
| if: github.repository == 'fulcrumgenomics/fgbio' && github.ref == 'refs/heads/main' | |
| needs: test | |
| runs-on: ubuntu-latest | |
| env: | |
| SONATYPE_USER: ${{ secrets.SONATYPE_USER }} | |
| SONATYPE_PASS: ${{ secrets.SONATYPE_PASS }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup Scala | |
| uses: olafurpg/setup-scala@v12 | |
| with: | |
| java-version: [email protected] | |
| - name: Upload to Sonatype | |
| run: | | |
| sbt +publish |