This repository has been archived by the owner on Jun 20, 2024. It is now read-only.
Add the "-K" option from bwa #372
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
tfenne
approved these changes
Feb 10, 2020
| @@ -49,15 +49,16 @@ object Bwa extends Configuration { | |||
| mergeBamAlignmentMem: String = "2G", | |||
| fifoBufferMem: String = "512M", | |||
| processAltMappings: Boolean = false, | |||
| orientation: PairOrientation = PairOrientation.FR | |||
| orientation: PairOrientation = PairOrientation.FR, | |||
| numFixedBases: Option[Int] = None | |||
There was a problem hiding this comment.
Maybe numInputBases? Or basesPerBatch?
nh13
force-pushed
the
nh_bwa_fixed_num_reads
branch
from
c842b96 to
84eb5d6
Compare
Sign up for free
to subscribe to this conversation on GitHub.
Already have an account?
Sign in.
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.