Updated header in merge

fritzsedlazeck · Jul 19, 2018 · 7c7731d · 7c7731d
1 parent ee77925
commit 7c7731d
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/src/merge_vcf/combine_svs.cpp b/src/merge_vcf/combine_svs.cpp
@@ -77,10 +77,10 @@ void print_header(FILE *& file, std::vector<std::string> names, std::map<std::st
 	fprintf(file, "%s", "##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description=\"Imprecise structural variation\">\n");
 	fprintf(file, "%s", "##INFO=<ID=PRECISE,Number=0,Type=Flag,Description=\"Precise structural variation\">\n");
 	fprintf(file, "%s", "##INFO=<ID=AVGLEN,Number=1,Type=Float,Description=\"Length of the SV\">\n");
-	fprintf(file, "%s", "##INFO=<ID=SVMETHOD,Number=1,Type=String,Description=\"Vector of samples supporting the SV.\">\n");
+	fprintf(file, "%s", "##INFO=<ID=SVMETHOD,Number=1,Type=String,Description=\"Method for generating this merged VCF file.\">\n");
 	fprintf(file, "%s", "##INFO=<ID=SVTYPE,Number=1,Type=String,Description=\"Type of the SV.\">\n");
-	fprintf(file, "%s", "##INFO=<ID=SUPP_VEC,Number=1,Type=String,Description=\"Number of samples supporting the variant.\">\n");
-	fprintf(file, "%s", "##INFO=<ID=SUPP,Number=1,Type=String,Description=\"Previous support vector\">\n");
+	fprintf(file, "%s", "##INFO=<ID=SUPP_VEC,Number=1,Type=String,Description=\"Vector of supporting samples.\">\n");
+	fprintf(file, "%s", "##INFO=<ID=SUPP,Number=1,Type=String,Description=\"Number of samples supporting the variant\">\n");
 	fprintf(file, "%s", "##INFO=<ID=STRANDS,Number=1,Type=String,Description=\"Indicating the direction of the reads with respect to the type and breakpoint.\">\n");
 	fprintf(file, "%s", "##FORMAT=<ID=GT,Number=1,Type=String,Description=\"Genotype\">\n");
 	fprintf(file, "%s", "##FORMAT=<ID=LN,Number=1,Type=Integer,Description=\"predicted length\">\n");

diff --git a/src/vcfs/Compoverlap_VCF.cpp b/src/vcfs/Compoverlap_VCF.cpp
@@ -37,7 +37,7 @@ void print_header(std::string vcf_file, FILE *& out) {
 	std::ifstream myfile;
 	myfile.open(vcf_file.c_str(), std::ifstream::in);
 	if (!myfile.good()) {
-		std::cout << "BED Parser: could not open file: " << vcf_file.c_str() << std::endl;
+		std::cout << "VCF Parser: could not open file: " << vcf_file.c_str() << std::endl;
 		exit(0);
 	}
 	myfile.getline(buffer, buffer_size);