update .Rd files. ToDo: additional checks for plotStabilityPaths()

fmicompbio · Jan 15, 2025 · 43dd581 · 43dd581
1 parent 327e8b9
commit 43dd581
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Showing 4 changed files with 16 additions and 15 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -29,7 +29,7 @@ Imports:
     ComplexHeatmap (>= 2.11.1),
     GenomeInfoDb,
     GenomicRanges,
-    ggplot2
+    ggplot2,
     glmnet,
     graphics,
     grDevices,

diff --git a/NAMESPACE b/NAMESPACE
@@ -27,6 +27,7 @@ export(randLassoStabSel)
 export(sampleRandomRegions)
 export(seqLogoGrob)
 export(setZeroBin)
+import(ggplot2)
 importFrom(BSgenome,getSeq)
 importFrom(BiocGenerics,sort)
 importFrom(BiocGenerics,strand)
@@ -133,6 +134,8 @@ importFrom(stats,pbinom)
 importFrom(stats,ppois)
 importFrom(stats,quantile)
 importFrom(stats,runif)
+importFrom(tidyr,pivot_longer)
+importFrom(tidyr,starts_with)
 importFrom(tools,file_path_as_absolute)
 importFrom(utils,getFromNamespace)
 importFrom(utils,read.delim)

diff --git a/R/plotting.R b/R/plotting.R
@@ -521,7 +521,7 @@ plotMotifHeatmaps <- function(x,
 #' @param alpha line transparency of the stability paths.
 #' @param ylim limits for y-axis.
 #'
-#' @return \code{TRUE} (invisibly).
+#' @return a \code{ggplot2} object.
 #' 
 #' @examples 
 #' ## create data set

diff --git a/man/plotStabilityPaths.Rd b/man/plotStabilityPaths.Rd