Code

Add filtering for Spectronaut#23

Code

Merged

csoneson merged 13 commits intomainfmicompbio/einprot:mainfrom add-filteringfmicompbio/einprot:add-filteringCopy head branch name to clipboardJul 21, 2024

+198-85

Commits

Commits on May 6, 2024

• Bump version

  csoneson

  committed
  4a112aa

• Replace 'reverse' by 'decoy'

  csoneson

  committed
  47d20f2

• Add filtering by score and number of peptides to Spectronaut workflow

  csoneson

  committed
  5290e50

• Update NEWS

  csoneson

  committed
  2c3386a

Commits on May 18, 2024

• GHA: use Bioc 3.19 container, use setup-r-dependencies action on Linux

  csoneson

  committed
  4032f05

Commits on May 21, 2024

• Document MinProbGlobal option

  csoneson

  committed
  d97e22b

• Document pathways collections

  csoneson

  committed
  4e394d7

Commits on Jun 3, 2024

• Add featureForHeatmaps to iSEE script generation in PTM workflow

  csoneson

  committed
  2031ee9

• Move modification-based filtering to after the normalization step for PDTMT PeptideGroups workflow

  csoneson

  committed
  038394b

• Fix typo

  csoneson

  committed
  e0f6131

Commits on Jul 21, 2024

• Add einprot citation

  csoneson

  committed
  c7206b6

• Harmonize bib file

  csoneson

  committed
  e6988c7

• Replace deprecated ecol argument

  csoneson

  committed
  4077dac