Code

30 change to unicycler v050#45

Code

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fmalmeida merged 38 commits intodevfmalmeida/MpGAP:devfrom 30-change-to-unicycler-v050fmalmeida/MpGAP:30-change-to-unicycler-v050Copy head branch name to clipboardMay 18, 2023

+778-119,124

Commits

Commits on May 9, 2023

• update version information

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  e63f450

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• remove old spades binary for new unicycler version

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• update dockerfile to use new conda recipe

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• add testing profiles

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Commits on May 10, 2023

• working conda installation

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• update multiqc report

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• fixed docker image

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• Merge branch 'dev' of https://github.com/fmalmeida/MpGAP into 30-change-to-unicycler-v050

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• increase asked cpus

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• Update nextflow_schema.json

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• decrease expected genome size

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• fix long reads assemblers installation

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• split long reads samplesheets

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Commits on May 11, 2023

• flye require 10.GB RAM

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• update workflows

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• easimon do not work in macos

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• update java

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• small update for tests

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• canu needs 4 cpus

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• update genome size value

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• split samplesheet in ont & pacbio

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• split proflies in ont & pacbio (hybrid)

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• delete unused files

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• new docker image has new python version

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Commits on May 12, 2023

• docker image fixed

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Commits on May 13, 2023

• skip flye tht requires much memory

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• fixed pacbio execution

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• revert to ubuntu

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• canu also is too much for git actions

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Commits on May 15, 2023

• remove unnecessary files

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• modify pilon polish script to run on number of desired rounds

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• fix output namings

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• fix outputs

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Commits on May 18, 2023

• pacbio profile working

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• update pilon info in docs

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• update changelog

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• upload yml with version of installed tools

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• update docs

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