rnachipintegrator: update the tool to use version 3.0.0 + Python 3.9. #32
Workflow file for this run
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# This workflow will run the Planemo test scripts for the tools | |
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
name: planemo-ci-tests | |
on: [push, pull_request] | |
jobs: | |
run-ci-tests: | |
# Use 'runs-on: ubuntu-20.04' if you need Python 3.6 | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
# Define the tools and Galaxy versions to test | |
galaxy-tool: | |
- pal_finder | |
- weeder2 | |
- rnachipintegrator | |
- macs21 | |
- motif_tools | |
galaxy-version: | |
- "20.05" | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v2 | |
- name: Set up Python 3.8 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.8 | |
- name: Install Virtualenv | |
run: sudo apt-get install python3-virtualenv | |
- name: Install Planemo 0.75 | |
run: python -m pip install planemo==0.75.8 | |
- name: Checkout Galaxy version ${{ matrix.galaxy-version }} | |
run: | | |
git clone https://github.com/galaxyproject/galaxy/ \ | |
-b release_${{ matrix.galaxy-version }} \ | |
galaxy_${{ matrix.galaxy-version }} | |
- name: Run Planemo tests for ${{ matrix.galaxy-tool }} | |
run: | | |
./tools/${{ matrix.galaxy-tool }}/run_planemo_tests.sh \ | |
--galaxy_root galaxy_${{ matrix.galaxy-version }} |