Same

.github/workflows/deploy.yml

@@ -0,0 +1,63 @@
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+# Sample workflow for building and deploying a Jekyll site to GitHub Pages
+name: Deploy Jekyll site to Pages
+
+on:
+  # Runs on pushes targeting the default branch
+  push:
+    branches: ["gh-pages"]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow one concurrent deployment
+concurrency:
+  group: "pages"
+  cancel-in-progress: true
+
+jobs:
+  # Build job
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Setup Ruby
+        uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: 2.6
+          bundler-cache: true # runs 'bundle install' and caches installed gems automatically
+          cache-version: 0 # Increment this number if you need to re-download cached gems
+      - name: Setup Pages
+        id: pages
+        uses: actions/configure-pages@v2
+      - name: Build with Jekyll
+        # Outputs to the './_site' directory by default
+        run: bundle exec jekyll build --baseurl "${{ steps.pages.outputs.base_path }}"
+        env:
+          JEKYLL_ENV: production
+      - name: Upload artifact
+        # Automatically uploads an artifact from the './_site' directory by default
+        uses: actions/upload-pages-artifact@v1
+
+  # Deployment job
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    needs: build
+    steps:
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v1

Gemfile

@@ -9,19 +9,29 @@ source "https://rubygems.org"
 # This will help ensure the proper Jekyll version is running.
 # Happy Jekylling!
 
-gem "github-pages", group: :jekyll_plugins
+#gem "github-pages", group: :jekyll_plugins
 
 # If you want to use Jekyll native, uncomment the line below.
 # To upgrade, run `bundle update`.
 
-# gem "jekyll"
+gem "jekyll"
 
 gem "wdm", "~> 0.1.0" if Gem.win_platform?
 
+gem "kramdown-parser-gfm"
+
+gem 'rake'
+gem 'rake-jekyll'
+
 # If you have any plugins, put them here!
 group :jekyll_plugins do
   # gem "jekyll-archives"
   gem "jekyll-feed"
   gem 'jekyll-sitemap'
   gem 'hawkins'
+  gem 'jekyll-scholar'
+  gem 'jekyll-paginate'
+  gem 'jekyll-gist'
+  gem 'jekyll-redirect-from'
+  gem "github-pages"
 end

_bibliography/references.bib

@@ -0,0 +1,185 @@
+---
+---
+
+
+
+@article{Oliveira2023,
+    title = {A systematic literature review on the impact of formatting elements on code legibility},
+    author = {Delano Oliveira and Reydne Santos and Fernanda Madeiral and Hidehiko Masuhara and Fernando Castor},
+    journal = {Journal of Systems and Software},
+    volume = {203},
+    pages = {111728},
+    year = {2023},
+    issn = {0164-1212},
+    doi = {https://doi.org/10.1016/j.jss.2023.111728},
+    url = {https://www.sciencedirect.com/science/article/pii/S0164121223001231},
+}
+
+@techreport{Etemadi,
+    title = {{Sorald: Automatic Patch Suggestions for SonarQube Static Analysis Violations}},
+    author = {Etemadi, Khashayar and Harrand, Nicolas and Larsén, Simon and Adzemovic, Haris and Phu, Henry Luong and Verma, Ashutosh and Madeiral, Fernanda and Wikström, Douglas and Monperrus, Martin},
+    journal = {IEEE Transactions on Dependable and Secure Computing},
+    volume = {20},
+    number = {4},
+    pages = {2794-2810},
+    year = {2023},
+    doi = {10.1109/TDSC.2022.3167316},
+    url = {https://ieeexplore.ieee.org/document/9756950},
+}
+
+@article{Loriot2022,
+    title = {{Styler: learning formatting conventions to repair Checkstyle violations}},
+    author = {Benjamin Loriot and Fernanda Madeiral and Martin Monperrus},
+    journal = {Empirical Software Engineering (EMSE)},
+    volume = {27},
+    number = {149},
+    pages = {1-36},
+    year = {2022},
+    doi = {10.1007/s10664-021-10107-0},
+    url = {https://link.springer.com/article/10.1007/s10664-021-10107-0},
+    open_access_pdf = {http://arxiv.org/pdf/1904.01754},
+    tool = {https://github.com/KTH/styler},
+    dataset = {https://github.com/KTH/checkstylerr},
+    experiments = {https://github.com/KTH/styler-experiments},
+}
+
+@inproceedings{Madeiral2021,
+    author = {Fernanda Madeiral and Thomas Durieux},
+    booktitle = {Proceedings of the 18th IEEE/ACM International Conference on Mining Software Repositories (MSR '21), Mining Challenge Track},
+    title = {A large-scale study on human-cloned changes for automated program repair},
+    year = {2021},
+    pages = {510-514},
+    doi = {10.1109/MSR52588.2021.00064},
+    url = {https://doi.ieeecomputersociety.org/10.1109/MSR52588.2021.00064},
+    publisher = {IEEE Computer Society},
+    address = {Los Alamitos, CA, USA},
+    month = {may}
+}
+
+@inproceedings{Oliveira2020,
+    title = {{Evaluating Code Readability and Legibility: An Examination of Human-centric Studies}},    
+    author = {Delano Oliveira, Reydne Bruno, Fernanda Madeiral, and Fernando Castor},
+    booktitle = {Proceedings of the 36th IEEE International Conference on Software Maintenance and Evolution (ICSME '20)},
+    year = {2020},
+    pages = {348-359},
+    doi = {10.1109/ICSME46990.2020.00041},
+    url = {https://doi.org/10.1109/ICSME46990.2020.00041},
+}
+  
+@inproceedings{Madeiral2019Bears,
+    title = {{Bears: An Extensible Java Bug Benchmark for Automatic Program Repair Studies}},
+    author = {Fernanda Madeiral and Simon Urli and Marcelo Maia and Martin Monperrus},
+    booktitle = {Proceedings of the 26th IEEE International Conference on Software Analysis, Evolution and Reengineering (SANER '19)},
+    year = {2019},
+    pages = {468--478},
+    doi = {10.1109/SANER.2019.8667991},
+    url = {https://arxiv.org/abs/1901.06024},
+    publisher = {IEEE},
+    address = {Hangzhou, China},
+    artifacts = {https://github.com/bears-bugs},
+}
+
+@inproceedings{Durieux2019,
+    title = {{Empirical Review of Java Program Repair Tools: A Large-Scale Experiment on 2,141 Bugs and 23,551 Repair Attempts}},
+    author = {Thomas Durieux, Fernanda Madeiral, Matias Martinez, and Rui Abreu},
+    booktitle = {Proceedings of the 27th ACM Joint European Software Engineering Conference and Symposium on the Foundations of Software Engineering (ESEC/FSE '19)},
+    year = {2019},
+    isbn = {9781450355728},
+    publisher = {Association for Computing Machinery},
+    address = {New York, NY, USA},
+    url = {https://doi.org/10.1145/3338906.3338911},
+    doi = {10.1145/3338906.3338911},
+    pages = {302–313},
+    numpages = {12},
+    location = {Tallinn, Estonia},
+}
+
+@article{Souza2019,
+    title = {{Bootstrapping cookbooks for APIs from crowd knowledge on Stack Overflow}},
+    author = {Lucas B.L. Souza and Eduardo C. Campos and Fernanda Madeiral and Klérisson Paixão and Adriano M. Rocha and Marcelo de Almeida Maia},
+    journal = {Information and Software Technology},
+    volume = {111},
+    pages = {37-49},
+    year = {2019},
+    issn = {0950-5849},
+    doi = {https://doi.org/10.1016/j.infsof.2019.03.009},
+    url = {https://www.sciencedirect.com/science/article/pii/S0950584919300564},
+}
+
+@inproceedings{Madeiral2018,
+    title = {Towards an automated approach for bug fix pattern detection},
+    author = {Fernanda Madeiral and Thomas Durieux and Victor Sobreira and Marcelo Maia},
+    booktitle = {Proceedings of the 6th Workshop on Software Visualization, Evolution and Maintenance (VEM '18)},
+    year = {2018},
+    url = {https://arxiv.org/abs/1807.11286},
+    tool = {https://github.com/lascam-UFU/automatic-diff-dissection},
+}
+
+@inproceedings{Sobreira2018defects4jdissection,
+    title = {{Dissection of a Bug Dataset: Anatomy of 395 Patches from Defects4J}},
+    author = {Victor Sobreira and Thomas Durieux and Fernanda Madeiral and Martin Monperrus and Marcelo A. Maia},
+    booktitle = {Proceedings of the 25th IEEE International Conference on Software Analysis, Evolution and Reengineering (SANER '18)},
+    year = {2018},
+    isbn = {978-1-5386-4970-1},
+    location = {Campobasso, Italy},
+    pages = {130--140},
+    numpages = {11},
+    url = {https://arxiv.org/abs/1801.06393},
+    doi = {10.1109/SANER.2018.8330203},
+    publisher = {IEEE},
+    address = {Campobasso, Italy},
+    dataset = {https://github.com/program-repair/defects4j-dissection},
+}
+
+@inproceedings{Paixao2017,
+    title = {{On the Interplay between Non-Functional Requirements and Builds on Continuous Integration}},
+    author = {Klérisson V. R. Paixão, Crícia Z. Felício, Fernanda M. Delfim and Marcelo A. Maia},
+    booktitle = {Proceedings of the 14th International Conference on Mining Software Repositories (MSR '17)---Mining Challenge Track},
+    year = {2017},
+    location = {Buenos Aires, Argentina},
+}
+
+@article{Delfim2016-jbcs,
+    title = {{Redocumenting APIs with crowd knowledge: a coverage analysis based on question types}},
+    author = {Fernanda Madeiral Delfim and Kl{\'e}risson V. R. Paix{\~a}o and Damien Cassou and Marcelo Almeida Maia},
+    journal = {Journal of the Brazilian Computer Society (JBCS)},
+    issue_date = {December 2016},
+    volume = {22},
+    number = {9},
+    month = dec,
+    year = {2016},
+    issn = {1678-4804},
+    pages = {1--34},
+    numpages = {34},
+    url = {https://doi.org/10.1186/s13173-016-0049-0},
+    doi = {10.1186/s13173-016-0049-0},
+    publisher = {Springer London},
+}
+
+@inproceedings{Madeiral2015,
+    title = {Redocumentando APIs com Conhecimento da Multidão: um estudo de cobertura da API Swing no Stack Overflow},
+    author = {Fernanda M. Delfim, Klérisson V. R. Paixão and Marcelo A. Maia},
+    booktitle = {Anais do III Workshop Visualização, Evolução e Manutenção de Software (VEM '15), do VI Congresso Brasileiro de Software: Teoria e Prática (CBSoft '15)},
+    year = {2015},
+}
+
+@inproceedings{Madeiral2015itng,
+    title = {Visual approach for change impact analysis: a controlled experiment},
+    author = {Fernanda M. Delfim, Lilian P. Scatalon, Jorge M. Prates and Rogério E. Garcia},
+    booktitle = {Proceedings of the 12th International Conference on Information Technology - New Generations (ITNG '15)},
+    year = {2015},
+}
+
+@inproceedings{Madeiral2013,
+    title = {Uma Proposta de Múltiplas Visões Coordenadas para Apoiar Análise de Impacto de Mudança},
+    author = {Fernanda Madeiral Delfim and Rogério Eduardo Garcia},
+    booktitle = {Anais do X Workshop de Manutenção de Software Moderna (WMSWM '13), do XII Simpósio Brasileiro de Qualidade de Software (SBQS '13)},
+    year = {2013},
+}
+
+@inproceedings{Madeiral2013seke,
+    title = {Multiple Coordinated Views to Support Aspect Mining Using Program Slicing},
+    author = {Fernanda Madeiral Delfim and Rogério Eduardo Garcia},
+    booktitle = {Proceedings of the 25th International Conference on Software Engineering and Knowledge Engineering (SEKE '13)},
+    year = {2013},
+}

_config.yml

@@ -265,6 +265,8 @@ plugins:
   - jekyll-gist
   - jekyll-feed
   - jekyll-redirect-from
+  - jekyll/scholar
+
 # mimic GitHub Pages with --safe
 whitelist:
   - jekyll-paginate
@@ -273,6 +275,28 @@ whitelist:
   - jekyll-feed
   - jemoji
 
+# scholar
+scholar:
+  style: assets/bib.csl
+  locale: en
+  order: descending
+  sort_by: year, month
+
+  source: ./_bibliography
+  bibliography: references.bib
+  bibliography_template: bib_template
+
+  bibliography_list_tag: 'div'
+  bibliography_item_tag: 'span'
+
+  bibliography_list_attributes:
+    reversed: "reversed"
+
+  replace_strings: true
+  join_strings:    true
+
+  bibtex_skip_fields: [code, data, tool, pdf, slides, poster, abbrv, month, month_numeric, acceptance, pubcls, pubtype]
+  repository: papers
 
 # Archives
 #  Type

_layouts/bib_template.html

@@ -0,0 +1,36 @@
+<style>
+    table {
+        font-size: 18px;
+    }
+
+    table,
+    td {
+        border: 0px;
+        border-collapse: collapse;
+        padding-left: 0;
+    }
+</style>
+<div class="refs-row">
+    <table>
+        <tr>
+            {% if entry.abbrv %}
+            <td width="120" valign="top"><span class="abbrv">{{entry.abbrv}}</span></td>
+            {% endif %}
+            <td>
+                <div class="reference">
+                    {{ reference }}
+                </div>
+
+                {% if entry.open_access_pdf %} <span class="refs-link"><a href="{{entry.open_access_pdf}}" target="_blank">PDF</a></span> &middot; {% endif %}
+
+                <span class="refs-link"><a href="javascript:void(0)" onclick="$('#bibtex-entry-{{key}}').slideToggle();">BibTeX</a></span> {% if entry.tool %} &middot; <span class="refs-link"><a href="{{entry.tool}}" target="_blank">Tool</a></span> {%
+                endif %} {% if entry.dataset %} &middot; <span class="refs-link"><a href="{{entry.dataset}}" target="_blank">Dataset</a></span> {% endif %} {% if entry.experiments %} &middot; <span class="refs-link"><a href="{{entry.experiments}}" target="_blank">Experiments</a></span>                {% endif %} {% if entry.artifacts %} &middot; <span class="refs-link"><a href="{{entry.artifacts}}" target="_blank">Artifacts</a></span> {% endif %}
+
+                <div class="bibtex noshow" style="width:600px;overflow:auto">
+                    <pre class="bibtex-entry" id="bibtex-entry-{{key}}" style="display: none;">{{ entry.bibtex }}</pre>
+                </div>
+            </td>
+        </tr>
+    </table>
+
+</div>

_pages/publications.md

@@ -5,10 +5,6 @@ title: "Publications"
 author_profile: true
 ---
 
-## Selected publications
-
-Benjamin Loriot, Fernanda Madeiral, and Martin Monperrus. "Styler: learning formatting conventions to repair Checkstyle violations". Empirical Software Engineering (EMSE), 2022.
-<br/>
-[Tool](https://github.com/KTH/styler) | [Dataset](https://github.com/KTH/checkstylerr) | [Experiments](https://github.com/KTH/styler-experiments)
-<br/>
+&nbsp;  
 
+{% bibliography %}