Bug fixes

• Reading the GFA is much faster now
• works on GFAs without sequences (where there's a * instead)
• fixing a bug where certain bubbles were marked as superbubble but they were not
• Accepts graph where N in the sequence
• general small bug fixes.

v1.1.0

This new release now works with overlap graphs and de Bruijn graphs, so it only takes the GFA file as input and no more k value. Also, doesn't use recursion for finding bubble chains which was taking too much memory and breaking for big graphs.

Was minimally tested and seems to work, still needs more thorough testing

v1.0.1

BFS and Chainout were fixed in this minor update after the JSON output was updated.

After unpacking, should be easily installed using python3 setup.py install or to install for a user without having admin access (e.g. on a server) python3 setup.py install --user
The binary BubbleGun should be available in ~/./local/bin and can be called from the terminal with BubbleGun

First release

This is the first release of BubbleGun. So far been tested by several users and working.
After unpacking, should be easily installed using python3 setup.py install or to install for a user without having admin access (e.g. on a server) python3 setup.py install --user
The binary BubbleGun should be available then in ~/./local/bin and can be called from terminal with BubbleGun