This is the dataset associated with the paper titled "Publicly Available Imaging Datasets for Age-related Macular Degeneration: Evaluation according to the Findable, Accessible, Interoperable, Reproducible (FAIR) Principles". Age-related macular degeneration (AMD), a leading cause of vision loss among older adults, affects more than 200 million people worldwide. In this paper, We evaluated openly available AMD-related datasets containing optical coherence tomography (OCT) data against the FAIR principles. This repository contains the data related to our evaluation. See this inventory for all related resources, including the paper.
This dataset is structured according to the SPARC Data Structure v2.1 (c.f. related manuscript and documentation) and curated using the SPARC data curation software SODA v15.0.2.
Simply download this repository to use the data files. Alternatively, you can download it from Zenodo. The main data files are in the primary folder. There is a manifest.xlsx file in that folder that describe both files. The docs folder contain supplementary figures associated with the paper, which are also described in the manisfest.xlsx file. See this inventory for a link to the Jupyter notebook we developed to analyze and visualize the data.
This work is licensed under a Creative Commons Attribution 4.0 International License.
Use the GitHub issues for submitting feedback or making suggestions. You can also fork the repository and submit a pull request with suggestions.
If you use this dataset, please cite the related paper (it will be listed here when available) and also cite this repository as (see on Zenodo for citing a specific version of this dataset):
Gim, Nayoon, Ferguson, Alina, Blazes, Marian, Soundarajan, Sanjay, Gasimova, Aydan, Patel, Bhavesh & Lee, Cecilia. (2024). Dataset: FAIR AMD OCT Datasets Paper [Data set]. Zenodo. 10.5281/zenodo.12669651