Update dependencies

.github/dependabot.yml

@@ -0,0 +1,14 @@
+# Please see the documentation for all configuration options:
+# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+
+version: 2
+updates:
+  - package-ecosystem: "pip"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      # Check for updates to GitHub Actions every week
+      interval: "weekly"

.github/workflows/scheduled.yml

@@ -30,9 +30,9 @@ jobs:
           python -m pytest -v --durations=0 --cov-report xml:cov.xml --cov-config=setup.cfg --cov=interpax/ --db ./prof.db
       - name: save coverage file and plot comparison results
         if: always()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
-          name: unit_test_artifact
+          name: unit_test_artifact_${{ matrix.python-version }}
           path: |
             ./cov.xml
             ./prof.db

.github/workflows/unittest.yml

@@ -42,22 +42,17 @@ jobs:
           python -m pytest -v --durations=0 --cov-report xml:cov.xml --cov-config=setup.cfg --cov=interpax/ --db ./prof.db
       - name: save coverage file and plot comparison results
         if: always()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
-          name: unit_test_artifact
+          name: unit_test_artifact_${{ matrix.python-version }}
           path: |
             ./cov.xml
             ./prof.db
       - name: Upload coverage
         id : codecov
-        uses: Wandalen/wretry.action@v1.0.36
+        uses: codecov/codecov-action@v5
         with:
-          action: codecov/codecov-action@v3
-          with: |
-            token: ${{ secrets.CODECOV_TOKEN }}
-            name: codecov-umbrella
-            files: ./cov.xml
-            fail_ci_if_error: true
-            verbose: true
-          attempt_limit: 10
-          attempt_delay: 60000 # ms, 1 min
+          name: codecov-umbrella
+          files: ./cov.xml
+          fail_ci_if_error: true
+          verbose: true

.pre-commit-config.yaml

@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/psf/black
-    rev: 22.10.0
+    rev: 24.10.0
     hooks:
       - id: black
   - repo: https://github.com/pre-commit/pre-commit-hooks
@@ -13,17 +13,17 @@ repos:
       - id: end-of-file-fixer
       - id: trailing-whitespace
   - repo: https://github.com/pycqa/isort
-    rev: 5.12.0
+    rev: 5.13.2
     hooks:
       - id: isort
         name: isort (python)
         args: ["--profile", "black"]
   - repo: https://github.com/PyCQA/flake8
-    rev: "5.0.4"
+    rev: "7.1.1"
     hooks:
       - id: flake8
         additional_dependencies: ["flake8-docstrings", "flake8-eradicate", "flake8-isort"]
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.2.0
+    rev: v3.19.0
     hooks:
       - id: pyupgrade

docs/conf.py

@@ -203,7 +203,6 @@ def linkcode_resolve(domain, info):
     #    'canonical_url': '',
     #    'analytics_id': 'UA-XXXXXXX-1',  #  Provided by Google in your dashboard
     "logo_only": True,
-    "display_version": True,
     "prev_next_buttons_location": "both",
     "style_external_links": False,
     "style_nav_header_background": "#3c4142",

interpax/_fd_derivs.py

@@ -40,6 +40,8 @@ def approx_df(
         First derivative of f with respect to x.
 
     """
+    # noqa: D202
+
     # close over static args to deal with non-jittable kwargs
     def fun(x, f):
         return _approx_df(x, f, method, axis, **kwargs)

requirements-dev.txt

@@ -1,29 +1,27 @@
 # standard install requirements
 -r ./requirements.txt
 
-jax[cpu] >= 0.3.2, <= 0.5.0
-scipy >= 1.5.0, < 2.0
+scipy >= 1.10.0, <= 1.14.1
 
 # building the docs
-sphinx > 3.0.0
-sphinx_copybutton
-sphinx-rtd-theme >= 1.0, < 2.0
-sphinx-github-style >= 1.0, <= 1.1
-
+sphinx >= 3.0.0, <= 8.1.3
+sphinx_copybutton <= 0.5.2
+sphinx-rtd-theme >= 1.0, < 3.0.3
+sphinx-github-style >= 1.0, <= 1.2.2
 
 # linting
-black == 22.10.0
-flake8 >= 5.0.0, <=6.0.0
-flake8-docstrings >= 1.0.0, <=2.0.0
-flake8-eradicate >= 1.0.0, <=2.0.0
-flake8-isort >=5.0.0, <= 6.0.0
-pre-commit
+black == 24.10.0
+flake8 >= 5.0.0, <= 7.1.1
+flake8-docstrings >= 1.0.0, <= 1.7.0
+flake8-eradicate >= 1.0.0, <= 1.5.0
+flake8-isort >=5.0.0, <= 6.1.1
+pre-commit <= 4.0.1
 
 # testing and benchmarking
-pytest >= 5.0.0
-pytest-benchmark
-pytest-cov >= 2.6.0
-pytest-monitor
+pytest >= 5.0.0, <= 8.3.4
+pytest-benchmark <= 5.1.0
+pytest-cov >= 2.6.0, <= 6.0.0
+pytest-monitor <= 1.6.6
 
 # building
 build

requirements.txt

@@ -1,3 +1,3 @@
-equinox >= 0.11, < 0.12
-jax >= 0.3.2, < 0.5.0
-numpy >= 1.20.0, < 2.2
+equinox >= 0.11.0, <= 0.11.10
+jax >= 0.3.2, <= 0.4.37
+numpy >= 1.20.0, <= 2.2.0

tests/test_interpolate.py

@@ -286,9 +286,7 @@ def test_interp3d_vector_valued(self):
         zp = np.linspace(0, 3, 25)
         xxp, yyp, zzp = np.meshgrid(xp, yp, zp, indexing="ij")
 
-        f = lambda x, y, z: np.array(
-            [np.sin(x) * np.cos(y) * z**2, 0.1 * (x + y - z)]
-        )
+        f = lambda x, y, z: np.array([np.sin(x) * np.cos(y) * z**2, 0.1 * (x + y - z)])
         fp = f(xxp.T, yyp.T, zzp.T).T
 
         fq = interp3d(x, y, z, xp, yp, zp, fp, method="nearest")