fix params typo

Closes nf-core#263
ewels · Nov 10, 2022 · 164646b · 164646b
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commit 164646b
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -5,6 +5,7 @@
 ### Pipeline Updates
 
 - ✨ Updated the `bismark2summary` step so that it no longer stages the aligned BAM files into the working directory. Should be much faster / cheaper for running on the cloud ([#268](https://github.com/nf-core/methylseq/pull/268))
+- 🐛 Fixed typo in parameter handling for input reference indices ([#263](https://github.com/nf-core/methylseq/issues/263))
 
 ### Software Updates
 

diff --git a/main.nf b/main.nf
@@ -20,8 +20,8 @@ nextflow.enable.dsl = 2
 
 params.fasta = WorkflowMain.getGenomeAttribute(params, 'fasta')
 params.fasta_index = WorkflowMain.getGenomeAttribute(params, 'fasta_index')
-params.bismark_index = WorkflowMain.getGenomeAttribute(params, 'fasta_index')
-params.bwa_meth_index = WorkflowMain.getGenomeAttribute(params, 'fasta_index')
+params.bismark_index = WorkflowMain.getGenomeAttribute(params, 'bismark_index')
+params.bwa_meth_index = WorkflowMain.getGenomeAttribute(params, 'bwa_meth_index')
 
 /*
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