Round 5 Submission from MODUS_Covid-Episim #299
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| name: Validations (R) | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: main | |
| paths: | |
| - 'data-processed/**' | |
| jobs: | |
| validate-submission: | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev libv8-dev libharfbuzz-dev libfribidi-dev | |
| - uses: r-lib/actions/setup-renv@v2 | |
| - name: Run validations | |
| env: | |
| PR_NUMBER: ${{ github.event.number }} | |
| run: | | |
| if (nchar(Sys.getenv("PR_NUMBER")) > 0) { | |
| v <- HubValidations::validate_pr( | |
| gh_repo = Sys.getenv("GITHUB_REPOSITORY"), | |
| pr_number = Sys.getenv("PR_NUMBER"), | |
| data_folder = "data-processed", | |
| metadata_folder = "model-metadata", | |
| abstract_folder = "model-abstracts" | |
| ) | |
| } else { | |
| v <- HubValidations::validate_repository() | |
| } | |
| HubValidations::check_for_errors(v) | |
| shell: Rscript {0} |