Update data fetcher gdac/erddap to retrieve BGC variables (oxygen) #202
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…min list but could be depending on the float
…min list but could be depending on the float
gmaze
added
enhancement
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Thanks @RaphaelBajon for this work ! |
…ew days with BGC manual, to know the most important variables using BGC floats). To be implemented bgc-standard/bgc-expert mode. An issue is pushed if the number of bgc requested variables is too high (server error).
About CI testsEvery time you push new commits, CI tests are triggered here: https://github.com/euroargodev/argopy/pull/202/checks Fetching BGC data from the erddap is already coded in tests, but skipped. argopy/argopy/tests/__init__.py Line 64 in 13a180b |
gmaze
changed the title
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I don't understand why CI tests with BGC dataset are successful with the |
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'PARAMATER_DATA_MODE' is not well implemented when requesting it from the erddap server. Each biological variables must have one mode 'A', 'R' or 'D' looking at the BGC documentation (for example, Section 4.2.3 or in the Argo Manual Section 2.6.5 PARAMETER DATA MODE) |
to keep track of PARAMETER_DATA_MODE values, must add the dimension, converting profiles to points
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This pull request was marked as staled automatically because it has not seen any activity in 90 days |
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This pull request was marked as staled automatically because it has not seen any activity in 90 days |
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Hey @gmaze,
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Hi @RaphaelBajon |
- fix open_mfdataset/drop_variables_not_in_all_datasets - fix open_dataset to handle HDF5 files
prepare for bgc support
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This pull request was marked as staled automatically because it has not seen any activity in 90 days |
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Hi @RaphaelBajon ! |
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let's keep it as a draft ! |
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This pull request was marked as staled automatically because it has not seen any activity in 90 days |
Trying to implement BGC Argo floats on argopy using the erddap server. The first goal of this request was to get oxygen variable. Yet it would be better if we could get all the variables of the BGC Argo floats (not only oxygen), loading them directly with argopy (really faster) once the new variables are implemented in the argopy source code.