Merge branch 'master' of https://github.com/euroargodev/argopy

argopy/data_fetchers/argovis_data.py

@@ -359,7 +359,10 @@ def to_xarray(self, errors: str = "ignore"):
             ds.attrs["DATA_ID"] = "ARGO-BGC"
         ds.attrs["DOI"] = "http://doi.org/10.17882/42182"
         ds.attrs["Fetched_from"] = self.server
-        ds.attrs["Fetched_by"] = getpass.getuser()
+        try:
+            ds.attrs["Fetched_by"] = getpass.getuser()
+        except:
+            ds.attrs["Fetched_by"] = 'anonymous'
         ds.attrs["Fetched_date"] = pd.to_datetime("now", utc=True).strftime("%Y/%m/%d")
         ds.attrs["Fetched_constraints"] = self.cname()
         ds.attrs["Fetched_uri"] = self.uri

argopy/data_fetchers/erddap_data.py

@@ -683,7 +683,10 @@ def post_process(self, this_ds, add_dm: bool = True, URI: list = None):  # noqa:
             this_ds.attrs["DATA_ID"] = "ARGO-BGC"
             this_ds.attrs["DOI"] = "http://doi.org/10.17882/42182"
         this_ds.attrs["Fetched_from"] = self.erddap.server
-        this_ds.attrs["Fetched_by"] = getpass.getuser()
+        try:
+            this_ds.attrs["Fetched_by"] = getpass.getuser()
+        except:
+            this_ds.attrs["Fetched_by"] = 'anonymous'
         this_ds.attrs["Fetched_date"] = pd.to_datetime("now", utc=True).strftime(
             "%Y/%m/%d"
         )

argopy/data_fetchers/gdacftp_data.py

@@ -281,7 +281,10 @@ def _preprocess_multiprof(self, ds):
             ds.attrs["DATA_ID"] = "ARGO-BGC"
         ds.attrs["DOI"] = "http://doi.org/10.17882/42182"
         ds.attrs["Fetched_from"] = self.server
-        ds.attrs["Fetched_by"] = getpass.getuser()
+        try:
+            ds.attrs["Fetched_by"] = getpass.getuser()
+        except:
+            ds.attrs["Fetched_by"] = 'anonymous'
         ds.attrs["Fetched_date"] = pd.to_datetime("now", utc=True).strftime("%Y/%m/%d")
         ds.attrs["Fetched_constraints"] = self.cname()
         ds.attrs["Fetched_uri"] = ds.encoding["source"]
@@ -347,7 +350,10 @@ def to_xarray(self, errors: str = "ignore"):
             ds.attrs["DATA_ID"] = "ARGO-BGC"
         ds.attrs["DOI"] = "http://doi.org/10.17882/42182"
         ds.attrs["Fetched_from"] = self.server
-        ds.attrs["Fetched_by"] = getpass.getuser()
+        try:
+            ds.attrs["Fetched_by"] = getpass.getuser()
+        except:
+            ds.attrs["Fetched_by"] = 'anonymous'
         ds.attrs["Fetched_date"] = pd.to_datetime("now", utc=True).strftime("%Y/%m/%d")
         ds.attrs["Fetched_constraints"] = self.cname()
         if len(self.uri) == 1:

docs/_static/pygments/lightbulb.css

@@ -0,0 +1,85 @@
+pre { line-height: 125%; }
+td.linenos .normal { color: #3c4354; background-color: transparent; padding-left: 5px; padding-right: 5px; }
+span.linenos { color: #3c4354; background-color: transparent; padding-left: 5px; padding-right: 5px; }
+td.linenos .special { color: #3c4354; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
+span.linenos.special { color: #3c4354; background-color: #ffffc0; padding-left: 5px; padding-right: 5px; }
+.highlight .hll { background-color: #6e7681 }
+.highlight { background: #1d2331; color: #d4d2c8 }
+.highlight .c { color: #7e8aa1 } /* Comment */
+.highlight .err { color: #f88f7f } /* Error */
+.highlight .esc { color: #d4d2c8 } /* Escape */
+.highlight .g { color: #d4d2c8 } /* Generic */
+.highlight .k { color: #FFAD66 } /* Keyword */
+.highlight .l { color: #D5FF80 } /* Literal */
+.highlight .n { color: #d4d2c8 } /* Name */
+.highlight .o { color: #FFAD66 } /* Operator */
+.highlight .x { color: #d4d2c8 } /* Other */
+.highlight .p { color: #d4d2c8 } /* Punctuation */
+.highlight .ch { color: #f88f7f; font-style: italic } /* Comment.Hashbang */
+.highlight .cm { color: #7e8aa1 } /* Comment.Multiline */
+.highlight .cp { color: #FFAD66; font-weight: bold } /* Comment.Preproc */
+.highlight .cpf { color: #7e8aa1 } /* Comment.PreprocFile */
+.highlight .c1 { color: #7e8aa1 } /* Comment.Single */
+.highlight .cs { color: #7e8aa1; font-style: italic } /* Comment.Special */
+.highlight .gd { color: #f88f7f; background-color: #3d1e20 } /* Generic.Deleted */
+.highlight .ge { color: #d4d2c8; font-style: italic } /* Generic.Emph */
+.highlight .ges { color: #d4d2c8 } /* Generic.EmphStrong */
+.highlight .gr { color: #f88f7f } /* Generic.Error */
+.highlight .gh { color: #d4d2c8 } /* Generic.Heading */
+.highlight .gi { color: #6ad4af; background-color: #19362c } /* Generic.Inserted */
+.highlight .go { color: #7e8aa1 } /* Generic.Output */
+.highlight .gp { color: #d4d2c8 } /* Generic.Prompt */
+.highlight .gs { color: #d4d2c8; font-weight: bold } /* Generic.Strong */
+.highlight .gu { color: #d4d2c8 } /* Generic.Subheading */
+.highlight .gt { color: #f88f7f } /* Generic.Traceback */
+.highlight .kc { color: #FFAD66 } /* Keyword.Constant */
+.highlight .kd { color: #FFAD66 } /* Keyword.Declaration */
+.highlight .kn { color: #FFAD66 } /* Keyword.Namespace */
+.highlight .kp { color: #FFAD66 } /* Keyword.Pseudo */
+.highlight .kr { color: #FFAD66 } /* Keyword.Reserved */
+.highlight .kt { color: #73D0FF } /* Keyword.Type */
+.highlight .ld { color: #D5FF80 } /* Literal.Date */
+.highlight .m { color: #DFBFFF } /* Literal.Number */
+.highlight .s { color: #D5FF80 } /* Literal.String */
+.highlight .na { color: #FFD173 } /* Name.Attribute */
+.highlight .nb { color: #FFD173 } /* Name.Builtin */
+.highlight .nc { color: #73D0FF } /* Name.Class */
+.highlight .no { color: #FFD173 } /* Name.Constant */
+.highlight .nd { color: #7e8aa1; font-weight: bold; font-style: italic } /* Name.Decorator */
+.highlight .ni { color: #95E6CB } /* Name.Entity */
+.highlight .ne { color: #73D0FF } /* Name.Exception */
+.highlight .nf { color: #FFD173 } /* Name.Function */
+.highlight .nl { color: #d4d2c8 } /* Name.Label */
+.highlight .nn { color: #d4d2c8 } /* Name.Namespace */
+.highlight .nx { color: #d4d2c8 } /* Name.Other */
+.highlight .py { color: #FFD173 } /* Name.Property */
+.highlight .nt { color: #5CCFE6 } /* Name.Tag */
+.highlight .nv { color: #d4d2c8 } /* Name.Variable */
+.highlight .ow { color: #FFAD66 } /* Operator.Word */
+.highlight .pm { color: #d4d2c8 } /* Punctuation.Marker */
+.highlight .w { color: #d4d2c8 } /* Text.Whitespace */
+.highlight .mb { color: #DFBFFF } /* Literal.Number.Bin */
+.highlight .mf { color: #DFBFFF } /* Literal.Number.Float */
+.highlight .mh { color: #DFBFFF } /* Literal.Number.Hex */
+.highlight .mi { color: #DFBFFF } /* Literal.Number.Integer */
+.highlight .mo { color: #DFBFFF } /* Literal.Number.Oct */
+.highlight .sa { color: #F29E74 } /* Literal.String.Affix */
+.highlight .sb { color: #D5FF80 } /* Literal.String.Backtick */
+.highlight .sc { color: #D5FF80 } /* Literal.String.Char */
+.highlight .dl { color: #D5FF80 } /* Literal.String.Delimiter */
+.highlight .sd { color: #7e8aa1 } /* Literal.String.Doc */
+.highlight .s2 { color: #D5FF80 } /* Literal.String.Double */
+.highlight .se { color: #95E6CB } /* Literal.String.Escape */
+.highlight .sh { color: #D5FF80 } /* Literal.String.Heredoc */
+.highlight .si { color: #95E6CB } /* Literal.String.Interpol */
+.highlight .sx { color: #95E6CB } /* Literal.String.Other */
+.highlight .sr { color: #95E6CB } /* Literal.String.Regex */
+.highlight .s1 { color: #D5FF80 } /* Literal.String.Single */
+.highlight .ss { color: #DFBFFF } /* Literal.String.Symbol */
+.highlight .bp { color: #5CCFE6 } /* Name.Builtin.Pseudo */
+.highlight .fm { color: #FFD173 } /* Name.Function.Magic */
+.highlight .vc { color: #d4d2c8 } /* Name.Variable.Class */
+.highlight .vg { color: #d4d2c8 } /* Name.Variable.Global */
+.highlight .vi { color: #d4d2c8 } /* Name.Variable.Instance */
+.highlight .vm { color: #d4d2c8 } /* Name.Variable.Magic */
+.highlight .il { color: #DFBFFF } /* Literal.Number.Integer.Long */

docs/index.rst

@@ -8,12 +8,6 @@ for standard users as well as Argo experts.
 
 |License| |Python version| |Anaconda-Server Badge|
 
-.. versionadded:: v0.1.14
-
-    - Rolling out incremental support for **bgc** variables 🎉
-    - New :ref:`Gallery of notebook examples <Gallery>` for **bgc** variables
-    - Check out a brief overview of new features on the :ref:`What's New` page
-
 
 Documentation
 -------------

docs/whats-new.rst

@@ -8,6 +8,13 @@ What's New
 |pypi dwn| |conda dwn|
 
 
+v0.1.15 (12 Dec. 2023)
+----------------------
+
+**Internals**
+
+- Fix bug whereby user name could not be retrieved using :func:`getpass.getuser`. This closes :issue:`310` and allows argopy to be integrated into the EU Galaxy tools for `ecology <https://github.com/galaxyecology/tools-ecology/pull/81>`_. (:pr:`311`) by `G. Maze <http://www.github.com/gmaze>`_.
+
 v0.1.14 (29 Sep. 2023)
 ----------------------
 
@@ -406,7 +413,7 @@ v0.1.13 (28 Mar. 2023)
 
 **Internals**
 
-- Because of the new :class:`argopy.plot.ArgoColors`, the :class:`argopy.plot.discrete_coloring` utility is deprecated in 0.1.13. Calling it will raise an error after argopy 0.1.14. (:pr:`245`) by `G. Maze <http://www.github.com/gmaze>`_
+- Because of the new :class:`argopy.plot.ArgoColors`, the `argopy.plot.discrete_coloring` utility is deprecated in 0.1.13. Calling it will raise an error after argopy 0.1.14. (:pr:`245`) by `G. Maze <http://www.github.com/gmaze>`_
 
 - New method to check status of web API: now allows for a keyword check rather than a simple url ping. This comes with 2 new utilities functions :meth:`utilities.urlhaskeyword` and :meth:`utilities.isalive`. (:pr:`247`) by `G. Maze <http://www.github.com/gmaze>`_.