Skip to content

ericaVoss/CommonDataModel

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Common Data Model v5.1.0

See full CDM specification file on our github wiki or in the CDM V5.1.0 PDF

Release Notes

This version is based on this CDM working group proposal #60 and #59. The proposed and accepted changes include adding a datetime field to every table that had a date column and adding field DENOMINATOR_VALUE to the DRUG_STRENGTH table. These were the new columns added:

PERSON

  • birth_datetime, not required

SPECIMEN

  • specimen_datetime, not required

DEATH

  • death_datetime, not required

VISIT_OCCURRENCE

  • visit_start_datetime, not required
  • visit_end_datetime, not required

PROCEDURE_OCCURRENCE

  • procedure_datetime, not required

DRUG_EXPOSURE

  • drug_exposure_start_datetime, not required
  • drug_exposure_end_datetime, not required

DRUG_STRENGTH

  • DENOMINATOR_VALUE, not required

DEVICE_EXPOSURE

  • device_exposure_start_datetime, not required
  • device_exposure_end_datetime, not required

CONDITION_OCCURRENCE

  • condition_start_datetime, not required
  • condition_end_datetime, not required

MEASUREMENT

  • measurement_datetime as time, not required

OBSERVATION

  • observation_datetime, not required

NOTE

  • note_datetime, not required

This repo contains the definition of the OMOP Common Data Model. It supports the 4 SQL technologies: Impala, Oracle, Postgres and SQL Server. For each, the DDL, constraints and indexes (if appropriate) are defined.

Versions are defined using tagging and versioning. Full versions (V6, 7 etc.) are released each year (1-Jan) and are not backwards compatible. Minor versions (V5.1, 5.2 etc.) are released each quarter (1-Apr, 1-Jul and 1-Sep) and are not guaranteed to be backwards compatible though an effort is made to make sure that current queries will not break. Micro versions (V5.1.1, V5.1.2 etc.) are released irregularly and often, and contain small hot fixes or backward compatible changes to the last minor version.

About

Definition and DDLs for the OMOP Common Data Model

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Languages

  • Batchfile 100.0%