Split vignette into topic-specific vignettes

[joshwlambert]

The current vignette is relatively large and contains information on both the functionality of the epiparameter package and its integration with other packages. This can be confusing to people new to the package, therefore I suggest splitting the vignette into 1) core functionality (one vignette) and 2) applications (several vignettes).

Remove old vignette:

• remove vignette

Core functionality:

• Getting started (introduction to <epidist> and <epiparam> classes)
• Using <epidist> and <epiparam> methods
• Parameter conversion and extraction

Applications:

• Quarantine
• Transmissibility
• Case-fatality rate
• Superspreading

Auxiliary:

• Parameter extraction bias

[joshwlambert]

Instead of having one vignette per application, I will add a use-cases vignette which will include the topics included in the above description, but will not be extensive/comprehensive.

For more expansive applications of {epiparameter} the Epiverse-TRACE training materials (which are currently being worked on and will include more information on applying {epiparameter} in the future) can be used.

[joshwlambert]

There is a now an ecosystem of documentation, training and how to guides within Epiverse-TRACE. Therefore, the application of {epiparameter} to other packages in the ecosystem or epidemiological tasks is no longer viewed necessary to be in this package.

Usage of {epiparameter} is included in other Epiverse-TRACE R packages, such as {superspreading} and {simulist}.

The suggested vignette on "Using <epidist> and <epiparam> methods" is now outdated as the <epiparam> class has been removed since #197 and the <epidist> class has been renamed <epiparameter> since #360.

Closing this issue, if vignettes outlining the application of {epiparameter} to epidemiological tasks are reconsidered to be needed this issue can be reopened.