filtered prs scores that failed qc

episphere · Sep 3, 2024 · cb286d0 · cb286d0
1 parent 73429ee
commit cb286d0
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Showing 2 changed files with 22 additions and 6 deletions.
diff --git a/sdk/prs.js b/sdk/prs.js
@@ -106,20 +106,36 @@ PRS.Match2  = function (data){
 
 PRS.calc = async function(matrix){
     let arr =[]
+    const badIds = ["anyId"]
     // todo remove qc from match2 function
     // todo remove users with old chips
     for (let i=0; i<matrix.my23.length; i++){
         console.log("---------------------------")
         console.log("processing user #...",i)
 
         for(let j=0; j<matrix.PGS.length; j++){
+
             let input = { "pgs":matrix.PGS[j], "my23":matrix.my23[i]}
+
             let res = PRS.Match2(input)
+            if(res.QC==true  ){
                 arr.push(res)
                 console.log("processing PGS model: ",matrix.PGS[j].id)
+            } else if(res.QC==false){
+                badIds.push(matrix.PGS[j].id)
+            }
         }
     }
-    return arr
+    console.log("badIds",badIds)
+    console.log("matrix.PGS",matrix.PGS)
+    console.log("matrix.my23",matrix.my23)
+    // if prs qc fails for one user, remove the connected pgs entry
+    const obj = {}
+    obj.users = matrix.my23
+    obj.pgs = matrix.PGS.filter(x=>!badIds.includes(x.id))
+    obj.prs =  arr.filter(x=> !badIds.includes(x.pgsId))
+    console.log("arr",arr)
+    return obj
 }
 // data object defined here ---
 

diff --git a/sdk/ui.js b/sdk/ui.js
@@ -134,8 +134,8 @@ const ui = async function (targetDiv) {
     console.log("dt.users", dt.users)
 
     dt.pgs = {}
-
-    let pgsIds = (await (getPgs.idsFromCategory(category))).sort().slice(3,6)
+// TODO filter ids by variant number using get scoreFIles
+    let pgsIds = (await (getPgs.idsFromCategory(category))).sort().slice(5,7)
     console.log("pgsIds", pgsIds)
     let pgsTxts = await Promise.all( pgsIds.map(async x => {
         let res = await getPgs.loadScoreHm(x)
@@ -155,8 +155,8 @@ const ui = async function (targetDiv) {
     console.log("data",dt.users.txts.filter(x=>  x.qc == true))
 
     let prsDt = PRS.calc(data)
-    dt.prs = await prsDt
-    console.log("dt", dt)
+    // if prs qc failes for one user, remove the connected pgs entry
+    console.log("prsDt", prsDt)
 
 }
 
@@ -202,7 +202,7 @@ const getUsersByPhenotypeId = async function (phenoId, keysLen, maxKeys) {
         id
     }) => userIds.includes(id));
     let cleanUsers
-    let maxUsers = 8
+    let maxUsers = 3
     if (userIds2.length < maxUsers) {
         cleanUsers =  getUsersByType("23andme", userIds2)
     } else {