v0.13.0

Added

• Column with start time from MinKNOW header to bamstats output.

Changed

• bamstats now prints mean_quality, iden, and acc values with 2 decimal places instead of 3 (the reason being that fastcat already uses 2 decimal places for mean_quality and more precision is unnecessary).

v0.12.0

Added

• Column with run ID from MinKNOW header to fastcat per-read stats and bamstats output.

v0.11.1

Fixed

• Bug in fastcat per-read summary stats.

v0.11.0

Changed

• Bamstats can now be run without a BAM index.
• fastcat -H now wraps all known header fields into SAM tags regardless of whether the header was "valid" (i.e. all expected fields were present) or not.

v0.10.2

Added

• Linux and macOS ARM conda packages.

v0.10.1

Fixed

• bamindex program missing from conda package.

v0.10.0

Added

• Create bamindex program to index unaligned BAMs for horizontal-parallel processing.

v0.9.0

Fixed

• Ensure reheadered fastq is indeed formatted as a valid SAM tag(s).

v0.8.0

Added

• Option to bamstats to add 'sample_name' column equivalent to fastcat.

v0.7.0

Added

• Option to report unmapped alignments in per read and summary files.