v0.17.1

Added

• --runids option to bamstats for enumerating detected run identifiers.

v0.17.0

Added

• --reads_per_file option can split inputs into batched files when demultiplexing. Users should use Unix split with piped output.
• --runids option to output a file enumerating detected run identifiers.

Changed

• Per-file read statistics now relate to filtered reads only.
• Link fastcat against zlib-ng for an even faster cat.

v0.16.0

Added

• Support for reading SAM tags from FASTQ headers.

Changed

• fastcat will output a tab between the Read ID and the SAM tags rather than a space to match samtools convention.
• bamstats uses bam_get_tag_caseinsensitive wrapper to get SAM tags with case insensitivity.
• fastcat and bamstats will infer a Run ID from the RG tag if RD is not available.
• Bumped version of htslib used to 1.19.

Fixed

• Incorrectly capitalised ONT SAM tags are now output in lowercase by fastcat: ch, rn, st.

v0.15.2

Fixed

• Duplicated recipe name in Makefile.

Added

• Section explaining bamstats output columns to README.

v0.15.1

Fixed

• Decimal precision of hisotgram outputs.

v0.15.0

Added

• Calculation of read length and quality histograms to fastcat and bamstats.
• Calculation of alignment accuracy and alignment read coverage to bamstats.

v0.14.1

Fixed

• Missing compilation of conda aarch64 package

v0.14.0

Added

• bamstats --duplex option allows to count the number of duplex reads and
  duplex-forming reads.

v0.13.2

Fixed

• Bug writing long reads to demultiplexed gzipped outputs.

v0.13.1

Fixed

• Bug writing UINTMAX_MAX for min_length and nan for mean_quality of a
  file in fastcat per-file stats if there were no reads in that file.