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- Add Winston and Sarah as authors, add ORCIDs
- Fix DOI's in paper.bib
- Remove unfinished paper citation, add DOI for preprint
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Vatsal A Jhalani committed Dec 20, 2024
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15 changes: 6 additions & 9 deletions joss/paper.bib
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Expand Up @@ -6,7 +6,7 @@ @article{franke2009hierarchical
pages = {1712-1723},
year = {2009},
issn = {0034-4257},
doi = {https://doi.org/10.1016/j.rse.2009.03.018},
doi = {10.1016/j.rse.2009.03.018},
url = {https://www.sciencedirect.com/science/article/pii/S0034425709001163},
author = {Jonas Franke and Dar A. Roberts and Kerry Halligan and Gunter Menz},
keywords = {Multiple Endmember Spectral Mixture Analysis (MESMA), Hyperspectral Mapper (HyMap), Urban, Land cover, Hyperspectral, Imaging spectrometry, Endmember selection, Hierarchical classification}
Expand All @@ -20,7 +20,7 @@ @article{roberts1998mapping
pages = {267-279},
year = {1998},
issn = {0034-4257},
doi = {https://doi.org/10.1016/S0034-4257(98)00037-6},
doi = {10.1016/S0034-4257(98)00037-6},
url = {https://www.sciencedirect.com/science/article/pii/S0034425798000376},
author = {D.A. Roberts and M. Gardner and R. Church and S. Ustin and G. Scheer and R.O. Green}
}
Expand All @@ -33,23 +33,20 @@ @article{asner2000biogeophysical
pages = {99-112},
year = {2000},
issn = {0034-4257},
doi = {https://doi.org/10.1016/S0034-4257(00)00126-7},
doi = {10.1016/S0034-4257(00)00126-7},
url = {https://www.sciencedirect.com/science/article/pii/S0034425700001267},
author = {Gregory P Asner and David B Lobell}
}

@article{OchoaQuantifying,
title = {Optimal soil and vegetation cover estimation for global
imaging spectroscopy using spectral mixture analysis},
journal = {In preparation},
journal = {In review},
doi = {10.22541/essoar.173193387.79878484/v1},
url = {https://essopenarchive.org/users/850248/articles/1241110-optimal-soil-and-vegetation-cover-estimation-for-global-imaging-spectroscopy-using-spectral-mixture-analysis},
author = {Francisco Ochoa and Philip G. Brodrick and Gregory S. Okin and Eyal Ben-Dor and Thoralf Meyer and David R. Thompson and Robert O. Green}
}

@article{OchoaEvaluating,
title = {Evaluating global spectral unmixing techniques using imaging spectroscopy data for retrieval of green, non-photosynthetic vegetation, and soil fractional cover},
author = {Francisco Ochoa and Philip G. Brodrick and Gregory S. Okin and Robert O. Green and David R. Thompson and Jorge A. Ochoa and Madeline N. Gillespie and Willow Coleman and Kathleen Grant}
}

@inproceedings{emit2020,
title={The Earth surface mineral dust source investigation: An Earth science imaging spectroscopy mission},
author={Green, Robert O and Mahowald, Natalie and Ung, Charlene and Thompson, David R and Bator, Lori and Bennet, Matthew and Bernas, Michael and Blackway, Natalie and Bradley, Christine and Cha, Jeff and others},
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8 changes: 7 additions & 1 deletion joss/paper.md
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Expand Up @@ -19,10 +19,16 @@ authors:
- name: Vatsal A. Jhalani
orcid: 0000-0003-0866-0858
affiliation: "1"
- name: Winston Olson-Duvall
orcid: 0000-0002-4210-0283
affiliation: "1"
- name: Sarah R. Lundeen
affiliation: "1"
- name: David R. Thompson
orcid: 0000-0003-1100-7550
affiliation: "1"
- name: Robert O. Green
orcid: 0000-0001-9447-3076
affiliation: "1"
affiliations:
- name: Jet Propulsion Laboratory, California Institute of Technology, USA
Expand Down Expand Up @@ -53,7 +59,7 @@ The code was designed for NASA's Earth Surface Mineral Dust Source Investigation
In particular, no central framework exists in which different unmixing strategies could be efficiently tested against one another.
`SpectralUnmixing` addresses this issue by drawing on a vast amount of existing literature and bringing the various proposed strategies together into a single codebase.
The framework also leverages a rich set of Julia packages for linear algebra, optimization, remote sensing data IO and more, resulting in a highly flexible and scalable unmixing package.
`SpectralUnmixing` has already supported the development of new unmixing strategies by accelerating the process of combining different components of the overall unmixing problem in novel ways [@OchoaQuantifying; @OchoaEvaluating]
`SpectralUnmixing` has already supported the development of new unmixing strategies by accelerating the process of combining different components of the overall unmixing problem in novel ways [@OchoaQuantifying]
The package's scalability and breadth will allow it to continue providing this kind of coupled flexibility and operational capacity into the future.

![Example usage of `SpectralUnmixing`: fractional cover from an EMIT spectral image. A) Red-green-blue (RGB) image of sample EMIT reflectance data observed near Sacramento, CA, USA with zoom-ins around labeled points (left). B) Fractional cover output of `SpectralUnmixing` driver script `unmix.jl` on EMIT reflectance image with zoom-ins around labeled points (right). The RGB values in the fractional cover correspond to fractions of endmember library classes: non-photosynthetic vegetation (npv), photosynthetic vegetation (pv), and soil, respectively. C) EMIT reflectance spectra of sample points labeled in A) and B), chosen to each have high fractions of each of the 3 classes. Each spectra is colored by the RGB value corresponding to their class fraction. Here, `unmix.jl` was run using the included example endmember library and with the arguments `--normalization brightness --mode sma-best --n_mc 20 --num_endmembers 30`\label{fig:unmixing}](fig.pdf)
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