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El-Kebir Group

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  1. cnaviz cnaviz Public

    Jupyter Notebook 12 5

  2. derna derna Public

    RNA sequence design for a target protein sequence

    C 9 2

  3. SPhyR SPhyR Public

    Single-cell Phylogeny Reconstruction

    Brainfuck 8 3

  4. PhySigs PhySigs Public

    Phylogenetic inference of exposures of mutational signatures

    Jupyter Notebook 5 1

  5. CloMu CloMu Public

    CloMu is a neural network based software for cancer phylogeny analysis.

    Python 5 1

  6. doubletD doubletD Public

    Python 4 4

Repositories

Showing 10 of 58 repositories
  • fastppm Public
    elkebir-group/fastppm’s past year of commit activity
    C++ 0 0 0 0 Updated Jan 4, 2025
  • TRIBAL_PARSE_preprocess Public
    elkebir-group/TRIBAL_PARSE_preprocess’s past year of commit activity
    Python 0 0 0 0 Updated Dec 18, 2024
  • MACH2 Public
    elkebir-group/MACH2’s past year of commit activity
    Python 2 0 0 0 Updated Dec 5, 2024
  • CloneTreeViz Public
    elkebir-group/CloneTreeViz’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 29, 2024
  • Pharming Public

    Solves the clonal tree inference with copy numbers problem

    elkebir-group/Pharming’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Nov 26, 2024
  • TRIBAL_Dandelion_Preprocess Public
    elkebir-group/TRIBAL_Dandelion_Preprocess’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 17, 2024
  • mach2-viz Public

    Cancer Metastasis and Clonal History (2) visualizer and exploratory tool

    elkebir-group/mach2-viz’s past year of commit activity
    JavaScript 4 MIT 1 0 0 Updated Nov 4, 2024
  • derna Public

    RNA sequence design for a target protein sequence

    elkebir-group/derna’s past year of commit activity
    C 9 BSD-3-Clause 2 1 0 Updated Oct 30, 2024
  • CNRein Public

    Single-Cell Copy Number Calling with Evolution-Aware Deep Reinforcement Learning

    elkebir-group/CNRein’s past year of commit activity
    Python 1 BSD-3-Clause 1 1 0 Updated Oct 16, 2024
  • clonesim Public

    Simulating clonal trees with segmental CNAs and SNVs

    elkebir-group/clonesim’s past year of commit activity
    C++ 2 0 0 0 Updated Oct 2, 2024
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