Adding text to Human clinical health data page #327
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
bedroesb
reviewed
Jul 15, 2024
bedroesb
reviewed
Jul 15, 2024
bedroesb
reviewed
Jul 15, 2024
bedroesb
reviewed
Jul 15, 2024
bedroesb
reviewed
Jul 15, 2024
bedroesb
reviewed
Jul 15, 2024
|
|
||
| * For interoperability, standardisation is essential for maintaining consistency and accuracy in data representation, which can be achieved by utilising widely accepted vocabularies like ICD-10 and SNOMED CT. | ||
| * Tools like the Ontology Lookup Service (OLS) and NCBO BioPortal provide access to various biomedical ontologies, supporting standardisation efforts and improving data quality and utility. These resources help researchers and healthcare providers ensure that their data adheres to the highest standards of accuracy and consistency. | ||
| * [NCBO BioPortal](http://bioportal.bioontology.org/): NCBO BioPortal is an extensive repository and web-based platform that provides access to a wide array of biomedical ontologies and terminologies, enabling users to search, browse, and utilise these resources for research and data annotation purposes. |
There was a problem hiding this comment.
Also in this section we might want to make use of our existing tools/add them to the tool list: https://github.com/martin-nc/infectious-diseases-toolkit/blob/martinc-hchd/_data/tool_and_resource_list.yml
There was a problem hiding this comment.
So I should add the Ontology Lookup Service (OLS) and NCBO BioPortal to the tool list (as they're not there)? I guess we don't add vocabularies like ICD-10?
I'll add links to HL7 and OMOP, since I see the links aren't in the text.
There was a problem hiding this comment.
Reason why I brought it up was because we do have them in the RDMkit added as a tool:
- description: EMBL-EBI's web portal for finding ontologies
id: ontology-lookup-service
name: Ontology Lookup Service
registry:
biotools: ols
fairsharing: Mkl9RR
tess: Ontology Lookup Service
url: https://www.ebi.ac.uk/ols/index
- description: A comprehensive repository of biomedical ontologies
id: bioportal
name: BioPortal
registry:
biotools: bioportal
fairsharing: 4m97ah
tess: BioPortal
url: https://bioportal.bioontology.org
- description: Collaborative effort to develob interoperable ontologies for the biological sciences
id: the-open-biological-and-biomedical-ontology-foundry
name: The Open Biological and Biomedical Ontology (OBO) Foundry
registry:
fairsharing-coll: bsg-d001083
url: http://obofoundry.org
There was a problem hiding this comment.
vocabularies we don't do normally indeed!
bedroesb
reviewed
Jul 15, 2024
Co-authored-by: Bert Droesbeke <[email protected]>
Co-authored-by: Bert Droesbeke <[email protected]>
Co-authored-by: Bert Droesbeke <[email protected]>
Co-authored-by: Bert Droesbeke <[email protected]>
bedroesb
reviewed
Jul 31, 2024
| * The use of [blockchain technology in Estonia’s digital healthcare](https://e-estonia.com/blockchain-healthcare-estonian-experience/) system enhances the security of health data by creating tamper-proof records for every patient encounter. | ||
| * [The WHO’s Global Influenza Surveillance and Response System (GISRS)](https://www.who.int/initiatives/global-influenza-surveillance-and-response-system) provides standardised testing procedures and reagents to laboratories worldwide, ensuring the accuracy and reliability of influenza data globally. | ||
| * Data should be shared as openly and as rapidly as possible, for example by uploading SARS-CoV-2 sequence to [The European Nucleotide Archive (ENA)](https://www.ebi.ac.uk/ena/browser/home). ENA is an open, supported platform for the management, sharing, integration, archiving and dissemination of sequence data. | ||
| * [The GISAID](https://gisaid.org/) Data Science Initiative platform promotes the rapid sharing of data, from priority pathogens including influenza, hCoV-19, respiratory syncytial virus (RSV), hMpxV as well as arboviruses including chikungunya, dengue and zika. It includes genetic sequence and related clinical and epidemiological data associated with human viruses, and geographical as well as species-specific data associated with avian and other animal viruses. However, GISAID is much more restrictive on data reuse compared to ENA, for example. |
There was a problem hiding this comment.
Same here, GISAID can be a tool {% tool "gisaid" %}
|
@bedroesb Has that addressed everything now? I've added the tools to the tools file and put them in the page text. |
bedroesb
approved these changes
Aug 8, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Adding the text for the page "Data description: Human clinical and health data". See the original Google Doc for reference.