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Fix: handle dependencies with package 'link' fields (#2690)
fix: when parsing dependencies, overwrite any 'link' property already set in package.json Some projects, like Mozilla Aframe, set a 'link' property at the root of their package.json file. This causes problems for our packageDependencies job, which extends that object and adds 'link' to signify the dependency dir is a symlink. Overwrite property by default. Closes #2685
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