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Kibana service fails to start after upgrading from 4.5.1 to 5.0.0-alpha4 #7681

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yuwtennis opened this issue Jul 8, 2016 · 6 comments
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bug Fixes for quality problems that affect the customer experience Pioneer Program

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@yuwtennis
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yuwtennis commented Jul 8, 2016

I am reporting a issue arose from the community of elasticsearch.

https://discuss.elastic.co/t/kibana-service-fails-to-start-after-upgrading-from-4-5-1-to-5-0-0-alpha4/55022

Problem
After upgrading kibana from 4.5.1 to 5.0.0-alpha by yum update , kibana fails to start as below.
OS is RHEL 7.2 64bit.

Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: kibana.service holdoff time over, scheduling restart.
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: Started Kibana.
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: Starting Kibana...
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[12491]: Failed at step USER spawning /usr/share/kibana/bin/kibana: No such process
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: kibana.service: main process exited, code=exited, status=217/USER
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: Unit kibana.service entered failed state.
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: kibana.service failed.
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: kibana.service holdoff time over, scheduling restart.
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: start request repeated too quickly for kibana.service
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: Failed to start Kibana.
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: Unit kibana.service entered failed state.
Jul 08 15:17:55 ip-172-30-1-196.ec2.internal systemd[1]: kibana.service failed.

Analysis
After checking the unit file for systemd, kibana now starts up with user kibana.

[root@ip-172-30-1-196 logstash]# cat /usr/lib/systemd/system/kibana.service
[Unit]
Description=Kibana

[Service]
Type=simple
User=kibana
Group=kibana
ExecStart=/usr/share/kibana/bin/kibana "-c /etc/kibana/kibana.yml"
Restart=always

[Install]
WantedBy=multi-user.target

After creating user _ #kibana_ , systemd still has errors

[root@ip-172-30-1-196 logstash]# useradd  -M -s /sbin/nologin kibana
[root@ip-172-30-1-196 logstash]# grep kibana /etc/passwd
kibana:x:1001:1001::/home/kibana:/sbin/nologin
Jul 08 15:30:39 ip-172-30-1-196.ec2.internal systemd[1]: kibana.service holdoff time over, scheduling restart.
Jul 08 15:30:39 ip-172-30-1-196.ec2.internal systemd[1]: Started Kibana.
Jul 08 15:30:39 ip-172-30-1-196.ec2.internal systemd[1]: Starting Kibana...
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: fs.js:549
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: return binding.open(pathModule._makeLong(path), stringToFlags(flags), mode);
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: ^
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: Error: EACCES: permission denied, open '/usr/share/kibana/optimize/.babelcache.json'
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: at Error (native)
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: at Object.fs.openSync (fs.js:549:18)
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: at Object.fs.writeFileSync (fs.js:1156:15)
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: at save (/usr/share/kibana/node_modules/babel-core/lib/api/register/cache.js:35:19)
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: at nextTickCallbackWith0Args (node.js:420:9)
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: at process._tickDomainCallback (node.js:390:13)
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: at Function.Module.runMain (module.js:443:11)
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: at startup (node.js:139:18)
Jul 08 15:30:40 ip-172-30-1-196.ec2.internal kibana[12623]: at node.js:968:3

To bypass this error , I now start up kibana with user root and group root.

Question
My question is should I chown the whole kibana env as below after yum update?

chown -R kibana:kibana /usr/share/kibana

@Bargs
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Bargs commented Jul 8, 2016

@jbudz is this related to #7475?

@Bargs Bargs added the bug Fixes for quality problems that affect the customer experience label Jul 8, 2016
@jbudz
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jbudz commented Jul 8, 2016

@Bargs negative. In 4.5 we don't have complete scripts for managing package installations, on upgrade or removal the kibana user deleted. This is run after the user is created (if neccessary) by the new package, so the user will always end up missing. Going forward, we have this fixed in 4.x and 5.x by https://github.com/elastic/kibana/pull/6674/files.

@yuwtennis to answer your question, /usr/share/kibana/optimize is all you should need to chown.

@Bargs
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Bargs commented Jul 8, 2016

Thanks @jbudz

@yuwtennis
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@jbudz thank you.

@jbudz
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jbudz commented Nov 1, 2016

Closing this for now, upgrade from 4.5.4+ to 4.x and 5.x should be working.

@jbudz jbudz closed this as completed Nov 1, 2016
@ErtanGoenuelal
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ErtanGoenuelal commented Oct 4, 2017

Can confirm that the Problem exists with Version 5.6.2-1
Installed: kibana-4.4.2-1.x86_64
Updated via yum after adjusting the yum Repo: kibana-5.6.2-1.x86_64

In /var/log/mesages i see:
Failed at step USER spawning /usr/share/kibana/bin/kibana: No such process
ll /usr/share/kibana/bin/kibana -rwxr-xr-x. 1 root root 612 Sep 23 15:26 /usr/share/kibana/bin/kibana

So no kibana User exists.

If i remove 5.6.2-1 and reinstall again the User will be created but the Folder is still owned by User root:
less /etc/passwd |grep kibana kibana:x:992:990:kibana service user:/home/kibana:/sbin/nologin

OS: CentOS Linux release 7.3.1611 (Core)
Kernel: 3.10.0-514.26.2.el7.x86_64

mistic pushed a commit that referenced this issue Apr 18, 2024
`v93.6.0` ⏩ `v94.1.0`

> [!important]
> 👋 Hello everyone - this is a special release containing `EuiTable`'s
conversion to Emotion, several long-overdue cleanups and breaking
changes, and one or two fun new features. First, let's address the big
questions:

### Q: I'm listed as a codeowner, how much should I manually QA/review?

Answer: It depends on what exactly in your code changed, but _in
general_ I would strongly suggest at least pulling this branch down and
doing a quick visual smoke test of all tables (_note: **not**
datagrids_) in your apps/plugins. You should not expect to see any major
visual regressions.

If your table contained any kind of custom styling or behavior (e.g.
custom CSS, etc.) I **strongly** recommend taking more time to QA
thoroughly to ensure your table still looks and behaves as expected.
Teams with very manual or specific updates will be flagged below in
comment threads.

### Q: When do I need to review by?

This PR will be merged **after** 8.14FF. Because this upgrade touches so
many files and teams, we're aiming for asking for an admin merge by EOD
4/18 regardless of full approval status.

As always, you're welcome to ping us after merge if you find any issues
later ([see our
FAQ](https://github.com/elastic/eui/blob/main/wiki/eui-team-processes/upgrading-kibana.md#faq-for-kibana-teams)),
as you will have until 8.15FF to catch any bugs.

### Q: What breaking changes were made, and why?

Here's a quick shortlist of all the changes made that affected the
majority of the commits in this PR:

#### <u>Removed several top-level table props</u>
- The `responsive` prop has been removed in favor of the new
`responsiveBreakpoint` prop (same `false` behavior as before)
- The following props were removed from basic and in-memory tables:
  - `hasActions`, `isSelectable`, and `isExpandable`
- These props were not used for functionality and were only used for
styling tables in mobile/responsive views, which is not a best practice
pattern we wanted for our APIs. Mobile tables are now styled correctly
without needing consumers to pass these extra props.
  - `textOnly`
- This prop was unused and had no meaningful impact on tables or table
content.

#### Removed hidden mobile vs. desktop DOM

Previously, EUI would set classes that applied `display: none` CSS for
content that was hidden for mobile vs. desktop. This is no longer the
case, and content that only displays for mobile or only displays for
desktop will no longer render to the DOM at all if the table is not in
that responsive state.

This is both more performant when rendering large quantities of
cells/content, and simpler to write test assertions for when comparing
what the user actually sees vs. what the DOM ‘sees’.
(c3eeb08441e4b6efe6505e7cddaa87b540ddb259,
78cefcd954a7b46eaccd05e431b5e24dc86071a3)

#### Removed direct usages of table `className`s

EuiTable `classNames` no longer have any styles attached to them, so
some instances where Kibana usages were applying the `className` for
styles have been replaced with direct component usage or removed
entirely (86ce80b).

#### Custom table cell styles

Any custom CSS for table cells was previously being applied to the inner
`div.euiTableCellContent` wrapper. As of this latest release, the
`className` and `css` props will now be applied directly to the outer
`td.euiTableRowCell` element. If you were targeting custom styles table
cells, please re-QA your styles to ensure everything still looks as
expected.

---

<details open><summary>Full changelog (click to collapse)</summary>

##
[`v94.1.0-backport.0`](https://github.com/elastic/eui/releases/v94.1.0-backport.0)

**This is a backport release only intended for use by Kibana.**

**Bug fixes**

- Fixed a visual text alignment regression in `EuiTableRowCell`s with
the `row` header scope
([#7681](elastic/eui#7681))

**Accessibility**

- Improved `EuiBasicTable` and `EuiInMemoryTable`'s selection checkboxes
to have unique aria-labels per row
([#7672](elastic/eui#7672))

## [`v94.1.0`](https://github.com/elastic/eui/releases/v94.1.0)

- Updated `EuiTableHeaderCell` to show a subdued `sortable` icon for
columns that are not currently sorted but can be
([#7656](elastic/eui#7656))
- Updated `EuiBasicTable` and `EuiInMemoryTable`'s
`columns[].actions[]`'s to pass back click events to `onClick` callbacks
as the second callback
([#7667](elastic/eui#7667))

## [`v94.0.0`](https://github.com/elastic/eui/releases/v94.0.0)

- Updated `EuiTable`, `EuiBasicTable`, and `EuiInMemoryTable` with a new
`responsiveBreakpoint` prop, which allows customizing the point at which
the table collapses into a mobile-friendly view with cards
([#7625](elastic/eui#7625))
- Updated `EuiProvider`'s `componentDefaults` prop to allow configuring
`EuiTable.responsiveBreakpoint`
([#7625](elastic/eui#7625))

**Bug fixes**

- `EuiBasicTable` & `EuiInMemoryTable` `isPrimary` actions are now
correctly shown on mobile views
([#7640](elastic/eui#7640))
- Table `mobileOptions`:
([#7642](elastic/eui#7642))
- `mobileOptions.align` is now respected instead of all cells being
forced to left alignment
- `textTruncate` and `textOnly` are now respected even if a `render`
function is not passed

**Breaking changes**

- Removed unused `EuiTableHeaderButton` component
([#7621](elastic/eui#7621))
- Removed the `responsive` prop from `EuiTable`, `EuiBasicTable`, and
`EuiInMemoryTable`. Use the new `responsiveBreakpoint` prop instead
([#7625](elastic/eui#7625))
- The following props are no longer needed by `EuiBasicTable` or
`EuiInMemoryTable` for responsive table behavior to work correctly, and
can be removed: ([#7632](elastic/eui#7632))
  - `isSelectable`
  - `isExpandable`
  - `hasActions`
- Removed the `showOnHover` prop from `EuiTableRowCell` /
`EuiBasicTable`/`EuiInMemoryTable`'s `columns` API. Use the new actions
`columns[].actions[].showOnHover` API instead.
([#7640](elastic/eui#7640))
- Removed top-level `textOnly` prop from `EuiBasicTable` and
`EuiInMemoryTable`. Use `columns[].textOnly` instead.
([#7642](elastic/eui#7642))

**DOM changes**

- `EuiTable` mobile headers no longer render in the DOM when not visible
(previously rendered with `display: none`). This may affect DOM testing
assertions. ([#7625](elastic/eui#7625))
- `EuiTableRowCell` now applies passed `className`s to the parent `<td>`
element, instead of to the inner cell content `<div>`.
([#7631](elastic/eui#7631))
- `EuiTableRow`s rendered by basic and memory tables now only render a
`.euiTableRow-isSelectable` className if the selection checkbox is not
disabled ([#7632](elastic/eui#7632))
- `EuiTableRowCell`s with `textOnly` set to `false` will no longer
attempt to apply the `.euiTableCellContent__text` className to child
elements. ([#7641](elastic/eui#7641))
- `EuiTableRowCell` no longer renders mobile headers to the DOM unless
the current table is displaying its responsive view.
([#7642](elastic/eui#7642))
- `EuiTableHeaderCell` and `EuiTableRowCell` will no longer render in
the DOM at all on mobile if their columns' `mobileOptions.show` is set
to `false`. ([#7642](elastic/eui#7642))
- `EuiTableHeaderCell` and `EuiTableRowCell` will no longer render in
the DOM at all on desktop if their columns' `mobileOptions.only` is set
to `true`. ([#7642](elastic/eui#7642))

**CSS-in-JS conversions**

- Converted `EuiTable`, `EuiTableRow`, `EuiTableRowCell`, and all other
table subcomponents to Emotion
([#7654](elastic/eui#7654))
- Removed the following `EuiTable` Sass variables:
([#7654](elastic/eui#7654))
  - `$euiTableCellContentPadding`
  - `$euiTableCellContentPaddingCompressed`
  - `$euiTableCellCheckboxWidth`
  - `$euiTableHoverColor`
  - `$euiTableSelectedColor`
  - `$euiTableHoverSelectedColor`
  - `$euiTableActionsBorderColor`
  - `$euiTableHoverClickableColor`
  - `$euiTableFocusClickableColor`
- Removed the following `EuiTable` Sass mixins:
([#7654](elastic/eui#7654))
  - `euiTableActionsBackgroundMobile`
  - `euiTableCellCheckbox`
  - `euiTableCell`
</details>
cee-chen added a commit that referenced this issue May 3, 2024
`v94.1.0-backport.0` ⏩ `v94.2.1-backport.0`

_[Questions? Please see our Kibana upgrade
FAQ.](https://github.com/elastic/eui/blob/main/wiki/eui-team-processes/upgrading-kibana.md#faq-for-kibana-teams)_

---

##
[`v94.2.1-backport.0`](https://github.com/elastic/eui/releases/v94.2.1-backport.0)

**This is a backport release only intended for use by Kibana.**

- Reverted the `EuiFlexGroup`/`EuiFlexItem` `component` prop feature due
to Kibana typing issues

## [`v94.2.1`](https://github.com/elastic/eui/releases/v94.2.1)

**Bug fixes**

- Fixed an `EuiTabbedContent` edge case bug that occurred when updated
with a completely different set of `tabs`
([#7713](elastic/eui#7713))
- Fixed the `@storybook/test` dependency to be listed in
`devDependencies` and not `dependencies`
([#7719](elastic/eui#7719))

## [`v94.2.0`](https://github.com/elastic/eui/releases/v94.2.0)

- Updated `getDefaultEuiMarkdownPlugins()` to allow excluding the
following plugins in addition to `tooltip`:
([#7676](elastic/eui#7676))
  - `checkbox`
  - `linkValidator`
  - `lineBreaks`
  - `emoji`
- Updated `EuiSelectable`'s `isPreFiltered` prop to allow passing a
configuration object, which allows disabling search highlighting in
addition to search filtering
([#7683](elastic/eui#7683))
- Updated `EuiFlexGroup` and `EuiFlexItem` prop types to support passing
any valid React component type to the `component` prop and ensure proper
type checking of the extra props forwarded to the `component`.
([#7688](elastic/eui#7688))
- Updated `EuiSearchBar` to allow the `@` special character in query
string searches ([#7702](elastic/eui#7702))
- Added a new, optional `optionMatcher` prop to `EuiSelectable` and
`EuiComboBox` allowing passing a custom option matcher function to these
components and controlling option filtering for given search string
([#7709](elastic/eui#7709))

**Bug fixes**

- Fixed an `EuiPageTemplate` bug where prop updates would not cascade
down to child sections
([#7648](elastic/eui#7648))
- To cascade props down to the sidebar, `EuiPageTemplate` now explicitly
requires using the `EuiPageTemplate.Sidebar` rather than
`EuiPageSidebar`
- Fixed `EuiFieldNumber`'s typing to accept an icon configuration shape
([#7666](elastic/eui#7666))
- Fixed `EuiFieldText` and `EuiFieldNumber` to render the correct
paddings for icon shapes set to `side: 'right'`
([#7666](elastic/eui#7666))
- Fixed `EuiFieldText` and `EuiFieldNumber` to fully ignore
`icon`/`prepend`/`append` when `controlOnly` is set to true
([#7666](elastic/eui#7666))
- Fixed `EuiColorPicker`'s input not setting the correct right padding
for the number of icons displayed
([#7666](elastic/eui#7666))
- Visual fixes for `EuiRange`s with `showInput`:
([#7678](elastic/eui#7678))
  - Longer `append`/`prepend` labels no longer cause a background bug
  - Inputs can no longer overwhelm the actual range in width
- Fixed a visual text alignment regression in `EuiTableRowCell`s with
the `row` header scope
([#7681](elastic/eui#7681))
- Fixed `toolTipProps` type on `EuiSuperUpdateButton` to use
`Partial<EuiToolTipProps>`
([#7692](elastic/eui#7692))
- Fixes missing prop type for `popperProps` on `EuiDatePicker`
([#7694](elastic/eui#7694))
- Fixed a focus bug with `EuiDataGrid`s with `leadingControlColumns`
when moving columns to the left/right
([#7701](elastic/eui#7701))
([#7698](elastic/eui#7698))
- Fixed `EuiSuperDatePicker` to validate date string with respect of
locale on `EuiAbsoluteTab`.
([#7705](elastic/eui#7705))
- Fixed a visual bug with `EuiSuperDatePicker`'s absolute tab on small
mobile screens ([#7708](elastic/eui#7708))
- Fixed i18n of empty and loading state messages for the
`FieldValueSelectionFilter` component
([#7718](elastic/eui#7718))

**Dependency updates**

- Updated `@hello-pangea/dnd` to v16.6.0
([#7599](elastic/eui#7599))
- Updated `remark-rehype` to v8.1.0
([#7601](elastic/eui#7601))

**Accessibility**

- Improved `EuiBasicTable` and `EuiInMemoryTable`'s selection checkboxes
to have unique aria-labels per row
([#7672](elastic/eui#7672))
- Added `aria-valuetext` attributes to `EuiRange`s with tick labels for
improved screen reader UX
([#7675](elastic/eui#7675))
- Updated `EuiAccordion` to keep focus on accordion trigger instead of
moving to content on click/keypress
([#7696](elastic/eui#7696))
- Added `aria-disabled` attribute to `EuiHorizontalSteps` when status is
"disabled" ([#7699](elastic/eui#7699))

---------

Co-authored-by: Tomasz Kajtoch <[email protected]>
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