Add more logging

elangovana · Sep 27, 2018 · 5256e4b · 5256e4b
1 parent 745a2f0
commit 5256e4b
Show file tree

Hide file tree

Showing 2 changed files with 8 additions and 1 deletion.
diff --git a/aws_batch/README.md b/aws_batch/README.md
@@ -16,5 +16,8 @@ export PYTHONPATH=./aws_batch
 
 export tag='latest'
 
-python aws_batch/register_job_download_raw_files.py lanax/kegg-pathway-extractor:$tag 
+python aws_batch/register_job_download_raw_files.py lanax/kegg-pathway-extractor:$tag <bucket>
+
+
+python aws_batch/register_job_simple_pipeline.py lanax/kegg-pathway-extractor:$tag <bucket>
 ```
diff --git a/source/pipeline/main_pipeline_abstractprep.py b/source/pipeline/main_pipeline_abstractprep.py
@@ -100,5 +100,9 @@ def run(input_dir, out_file):
     logging.basicConfig(level=logging.getLevelName(args.log_level), handlers=[logging.StreamHandler(sys.stdout)],
                         format='%(asctime)s - %(name)s - %(levelname)s - %(message)s')
 
+    logger = logging.getLogger(__name__)
+    logger.info("Starting run with arguments...\n{}".format(args.__dict__))
     run(args.input_dir,
         args.out_file)
+    logger.info("Completed run...")
+