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Fixed #916 - Scan Remover - Rename Bundle
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eselmeister committed Feb 22, 2022
1 parent 5984048 commit 0417c49
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Showing 43 changed files with 108 additions and 107 deletions.
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<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.feature</name>
<name>org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.feature</name>
<comment></comment>
<projects>
</projects>
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@@ -1,37 +1,39 @@
<?xml version="1.0" encoding="UTF-8"?>
<feature
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.feature"
label="Scan Remover Filter"
version="0.9.0.qualifier" provider-name="ChemClipse" plugin="org.eclipse.chemclipse.feature.branding">
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.feature"
label="Chromatogram Scan Filter"
version="0.9.0.qualifier"
provider-name="ChemClipse"
plugin="org.eclipse.chemclipse.feature.branding">

<description url="http://www.openchrom.net/plugins/filter/scanremover">
<description url="http://www.chemclipse.net">
This is a scan remover filter.
</description>

<copyright url="http://www.chemclipse.net">
Copyright (c) 2011, 2018 Lablicate GmbH.
Copyright (c) 2011, 2022 Lablicate GmbH.
</copyright>

<license url="http://www.eclipse.org/legal/epl-v10.html">
Copyright (c) 2011, 2018 Lablicate GmbH.
Copyright (c) 2011, 2022 Lablicate GmbH.
All rights reserved. This program and the accompanying materials
are made available under the terms of the Eclipse Public License
v1.0 which accompanies this distribution, and is available at
http://www.eclipse.org/legal/epl-v10.html
</license>

<plugin
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover"
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan"
download-size="0"
install-size="0"
version="0.0.0"
unpack="false"/>

<plugin
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.ui"
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.ui"
download-size="0"
install-size="0"
version="0.0.0"
unpack="false"/>

</feature>
</feature>
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version="0.0.0"/>

<includes
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.feature"
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.feature"
version="0.0.0"/>

<includes
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<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover</name>
<name>org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.ui</name>
<comment></comment>
<projects>
</projects>
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@@ -1,17 +1,17 @@
Manifest-Version: 1.0
Automatic-Module-Name: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.ui
Automatic-Module-Name: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.ui
Bundle-ManifestVersion: 2
Bundle-Name: Chromatogram Filter UI
Bundle-SymbolicName: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.ui;singleton:=true
Bundle-Name: Chromatogram Scan Filter UI
Bundle-SymbolicName: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.ui;singleton:=true
Bundle-Version: 0.9.0.qualifier
Bundle-Activator: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.ui.Activator
Bundle-Vendor: Chemclipse
Bundle-Activator: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.ui.Activator
Bundle-Vendor: ChemClipse
Require-Bundle: org.eclipse.ui,
org.eclipse.core.runtime,
org.eclipse.chemclipse.msd.model;bundle-version="0.8.0",
org.eclipse.chemclipse.logging;bundle-version="0.8.0",
org.eclipse.chemclipse.progress;bundle-version="0.8.0",
org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover;bundle-version="0.8.0",
org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan;bundle-version="0.8.0",
org.eclipse.chemclipse.chromatogram.msd.filter;bundle-version="0.8.0",
org.eclipse.chemclipse.logging.ui;bundle-version="0.8.0",
org.eclipse.chemclipse.processing;bundle-version="0.8.0",
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point="org.eclipse.ui.preferencePages">
<page
category="org.eclipse.chemclipse.chromatogram.filter.ui.preferences.filterPreferencePage"
class="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.ui.preferences.FilterPreferencePage"
id="org.eclipse.chemclipse.chromatogram.msd.filter.supplier.scanremover.ui.preferences.scanremoverFilterPreferencePage"
class="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.ui.preferences.PreferencePage"
id="org.eclipse.chemclipse.chromatogram.msd.filter.supplier.scan.ui.preferences.preferencePage"
name="Chromatogram Scan Filter">
</page>
</extension>
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@@ -1,5 +1,5 @@
/*******************************************************************************
* Copyright (c) 2011, 2018 Lablicate GmbH.
* Copyright (c) 2011, 2022 Lablicate GmbH.
*
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the Eclipse Public License v1.0
Expand All @@ -9,9 +9,9 @@
* Contributors:
* Dr. Philip Wenig - initial API and implementation
*******************************************************************************/
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.ui;
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.ui;

import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.support.ui.activator.AbstractActivatorUI;
import org.osgi.framework.BundleContext;

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Expand Up @@ -9,11 +9,11 @@
* Contributors:
* Dr. Philip Wenig - initial API and implementation
*******************************************************************************/
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.ui.preferences;
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.ui.preferences;

import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.model.ScanSelectorOption;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.ui.Activator;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.model.ScanSelectorOption;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.ui.Activator;
import org.eclipse.chemclipse.support.ui.preferences.fieldeditors.DoubleFieldEditor;
import org.eclipse.chemclipse.support.ui.preferences.fieldeditors.LabelFieldEditor;
import org.eclipse.chemclipse.support.ui.preferences.fieldeditors.SpacerFieldEditor;
Expand All @@ -23,9 +23,9 @@
import org.eclipse.ui.IWorkbench;
import org.eclipse.ui.IWorkbenchPreferencePage;

public class FilterPreferencePage extends FieldEditorPreferencePage implements IWorkbenchPreferencePage {
public class PreferencePage extends FieldEditorPreferencePage implements IWorkbenchPreferencePage {

public FilterPreferencePage() {
public PreferencePage() {

super(GRID);
setPreferenceStore(Activator.getDefault().getPreferenceStore());
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@@ -1,6 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.ui</name>
<name>org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan</name>
<comment></comment>
<projects>
</projects>
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@@ -1,10 +1,10 @@
Manifest-Version: 1.0
Automatic-Module-Name: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover
Automatic-Module-Name: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan
Bundle-ManifestVersion: 2
Bundle-Name: Scanremover
Bundle-SymbolicName: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover;singleton:=true
Bundle-Name: ChromatogramScanFilter
Bundle-SymbolicName: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan;singleton:=true
Bundle-Version: 0.9.0.qualifier
Bundle-Activator: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.Activator
Bundle-Activator: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.Activator
Bundle-Vendor: Chemclipse
Require-Bundle: org.eclipse.core.runtime,
org.eclipse.chemclipse.msd.model;bundle-version="0.8.0",
Expand All @@ -18,6 +18,6 @@ Require-Bundle: org.eclipse.core.runtime,
com.fasterxml.jackson.core.jackson-annotations;bundle-version="2.6.2"
Bundle-RequiredExecutionEnvironment: JavaSE-1.8
Bundle-ActivationPolicy: lazy
Export-Package: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.model,
org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.preferences,
org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.settings
Export-Package: org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.model,
org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.preferences,
org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.settings
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point="org.eclipse.chemclipse.chromatogram.filter.chromatogramFilterSupplier">
<ChromatogramFilterSupplier
description="This filter enables to remove a series of scans."
filter="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.core.FilterRemover"
filter="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.core.FilterRemover"
filterName="Scan Remover"
filterSettings="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.settings.FilterSettingsRemover"
filterSettings="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.settings.FilterSettingsRemover"
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover">
</ChromatogramFilterSupplier>
<ChromatogramFilterSupplier
description="This filters removes empty scans."
filter="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.core.FilterCleaner"
filter="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.core.FilterCleaner"
filterName="Scan Cleaner (Remove Empty)"
filterSettings="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.settings.FilterSettingsCleaner"
filterSettings="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.settings.FilterSettingsCleaner"
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.removeemptyscans">
</ChromatogramFilterSupplier>
<ChromatogramFilterSupplier
description="This filters deletes scan identification(s)."
filter="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.core.FilterDeleteIdentifier"
filter="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.core.FilterDeleteIdentifier"
filterName="Scan Targets (Delete)"
filterSettings="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.settings.FilterSettingsDeleteIdentifier"
filterSettings="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.settings.FilterSettingsDeleteIdentifier"
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.removescanidentifications">
</ChromatogramFilterSupplier>
<ChromatogramFilterSupplier
description="This filters selects a scan in the chromatogram."
filter="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.core.FilterScanSelector"
filter="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.core.FilterScanSelector"
filterName="Scan Selector"
filterSettings="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.settings.FilterSettingsScanSelector"
filterSettings="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.settings.FilterSettingsScanSelector"
id="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanselector">
</ChromatogramFilterSupplier>
</extension>
<extension
point="org.eclipse.core.runtime.preferences">
<initializer
class="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.preferences.PreferenceInitializer">
class="org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.preferences.PreferenceInitializer">
</initializer>
</extension>
</plugin>
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@@ -1,5 +1,5 @@
/*******************************************************************************
* Copyright (c) 2011, 2018 Lablicate GmbH.
* Copyright (c) 2011, 2022 Lablicate GmbH.
*
* All rights reserved. This program and the accompanying materials
* are made available under the terms of the Eclipse Public License v1.0
Expand All @@ -9,7 +9,7 @@
* Contributors:
* Dr. Philip Wenig - initial API and implementation
*******************************************************************************/
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover;
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan;

import org.osgi.framework.BundleActivator;
import org.osgi.framework.BundleContext;
Expand Down Expand Up @@ -40,4 +40,4 @@ public void stop(BundleContext bundleContext) throws Exception {

Activator.context = null;
}
}
}
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Expand Up @@ -9,7 +9,7 @@
* Contributors:
* Dr. Philip Wenig - initial API and implementation
*******************************************************************************/
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.core;
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.core;

import java.util.ArrayList;
import java.util.List;
Expand All @@ -18,9 +18,9 @@
import org.eclipse.chemclipse.chromatogram.filter.result.ChromatogramFilterResult;
import org.eclipse.chemclipse.chromatogram.filter.result.ResultStatus;
import org.eclipse.chemclipse.chromatogram.filter.settings.IChromatogramFilterSettings;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.exceptions.FilterException;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.settings.FilterSettingsCleaner;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.exceptions.FilterException;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.settings.FilterSettingsCleaner;
import org.eclipse.chemclipse.csd.model.core.IScanCSD;
import org.eclipse.chemclipse.model.core.IChromatogram;
import org.eclipse.chemclipse.model.core.IScan;
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Expand Up @@ -9,15 +9,15 @@
* Contributors:
* Philip Wenig - initial API and implementation
*******************************************************************************/
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.core;
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.core;

import org.eclipse.chemclipse.chromatogram.filter.core.chromatogram.AbstractChromatogramFilter;
import org.eclipse.chemclipse.chromatogram.filter.result.ChromatogramFilterResult;
import org.eclipse.chemclipse.chromatogram.filter.result.ResultStatus;
import org.eclipse.chemclipse.chromatogram.filter.settings.IChromatogramFilterSettings;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.exceptions.FilterException;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.settings.FilterSettingsDeleteIdentifier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.exceptions.FilterException;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.settings.FilterSettingsDeleteIdentifier;
import org.eclipse.chemclipse.model.core.IChromatogram;
import org.eclipse.chemclipse.model.core.IScan;
import org.eclipse.chemclipse.model.selection.IChromatogramSelection;
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Expand Up @@ -9,7 +9,7 @@
* Contributors:
* Dr. Philip Wenig - initial API and implementation
*******************************************************************************/
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.core;
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.core;

import java.util.ArrayList;
import java.util.List;
Expand All @@ -18,10 +18,10 @@
import org.eclipse.chemclipse.chromatogram.filter.result.ChromatogramFilterResult;
import org.eclipse.chemclipse.chromatogram.filter.result.ResultStatus;
import org.eclipse.chemclipse.chromatogram.filter.settings.IChromatogramFilterSettings;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.exceptions.FilterException;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.model.ScanRemoverPattern;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.settings.FilterSettingsRemover;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.exceptions.FilterException;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.model.ScanRemoverPattern;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.settings.FilterSettingsRemover;
import org.eclipse.chemclipse.model.core.IChromatogram;
import org.eclipse.chemclipse.model.core.IScan;
import org.eclipse.chemclipse.model.selection.IChromatogramSelection;
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Expand Up @@ -9,15 +9,15 @@
* Contributors:
* Philip Wenig - initial API and implementation
*******************************************************************************/
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.core;
package org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.core;

import org.eclipse.chemclipse.chromatogram.filter.core.chromatogram.AbstractChromatogramFilter;
import org.eclipse.chemclipse.chromatogram.filter.result.ChromatogramFilterResult;
import org.eclipse.chemclipse.chromatogram.filter.result.ResultStatus;
import org.eclipse.chemclipse.chromatogram.filter.settings.IChromatogramFilterSettings;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.exceptions.FilterException;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scanremover.settings.FilterSettingsScanSelector;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.exceptions.FilterException;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.preferences.PreferenceSupplier;
import org.eclipse.chemclipse.chromatogram.xxd.filter.supplier.scan.settings.FilterSettingsScanSelector;
import org.eclipse.chemclipse.model.core.IChromatogram;
import org.eclipse.chemclipse.model.core.IChromatogramOverview;
import org.eclipse.chemclipse.model.core.IScan;
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