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Update Mass Spectrum Header #2115

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merged 3 commits into from
Feb 28, 2025
+38 −15
Merged

Update Mass Spectrum Header #2115

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dabe243
Add description, plate and position on plate to MALDI header UI.
Mailaender Feb 28, 2025
09ceb1c
Format the data field name in bold font.
Mailaender Feb 28, 2025
da119ab
Add polarity to the header info.
Mailaender Feb 28, 2025
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53 changes: 38 additions & 15 deletions ...d.ui/src/org/eclipse/chemclipse/ux/extension/msd/ui/swt/ExtendedMassSpectrumHeaderUI.java
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Original file line number Diff line number Diff line change
Expand Up @@ -11,17 +11,21 @@
*******************************************************************************/
package org.eclipse.chemclipse.ux.extension.msd.ui.swt;

import java.util.ArrayList;
import java.util.List;

import org.eclipse.chemclipse.msd.model.core.IRegularMassSpectrum;
import org.eclipse.chemclipse.msd.model.core.IStandaloneMassSpectrum;
import org.eclipse.chemclipse.support.text.ValueFormat;
import org.eclipse.swt.SWT;
import org.eclipse.swt.custom.StyleRange;
import org.eclipse.swt.custom.StyledText;
import org.eclipse.swt.layout.FillLayout;
import org.eclipse.swt.widgets.Composite;
import org.eclipse.swt.widgets.Text;

public class ExtendedMassSpectrumHeaderUI extends Composite {

private Text text;
private StyledText styledText;

public ExtendedMassSpectrumHeaderUI(Composite parent, int style) {

Expand All @@ -32,36 +36,55 @@ public ExtendedMassSpectrumHeaderUI(Composite parent, int style) {
public void updateMassSpectrum(IRegularMassSpectrum massSpectrum) {

StringBuilder builder = new StringBuilder();
List<StyleRange> styleRanges = new ArrayList<>();
if(massSpectrum != null) {
addHeaderLine(builder, "Data", massSpectrum.getMassSpectrumType().label());
addHeaderLine(builder, "Technique", "MS" + massSpectrum.getMassSpectrometer());
addHeaderLine(builder, "Ions", Integer.toString(massSpectrum.getNumberOfIons()));
int offset = 0;
offset = addHeaderLine(builder, styleRanges, "Data", massSpectrum.getMassSpectrumType().label(), offset);
offset = addHeaderLine(builder, styleRanges, "Technique", "MS" + massSpectrum.getMassSpectrometer(), offset);
offset = addHeaderLine(builder, styleRanges, "Ions", Integer.toString(massSpectrum.getNumberOfIons()), offset);
offset = addHeaderLine(builder, styleRanges, "Polarity", massSpectrum.getPolarity().label(), offset);
if(massSpectrum instanceof IStandaloneMassSpectrum standaloneMassSpectrum) {
addHeaderLine(builder, "Name", standaloneMassSpectrum.getName());
addHeaderLine(builder, "File", standaloneMassSpectrum.getFile().getName());
addHeaderLine(builder, "Sample", standaloneMassSpectrum.getSampleName());
addHeaderLine(builder, "Instrument", standaloneMassSpectrum.getInstrument());
addHeaderLine(builder, "Operator", standaloneMassSpectrum.getOperator());
offset = addHeaderLine(builder, styleRanges, "Name", standaloneMassSpectrum.getName(), offset);
offset = addHeaderLine(builder, styleRanges, "File", standaloneMassSpectrum.getFile().getName(), offset);
offset = addHeaderLine(builder, styleRanges, "Sample", standaloneMassSpectrum.getSampleName(), offset);
offset = addHeaderLine(builder, styleRanges, "Description", standaloneMassSpectrum.getDescription(), offset);
offset = addHeaderLine(builder, styleRanges, "Instrument", standaloneMassSpectrum.getInstrument(), offset);
offset = addHeaderLine(builder, styleRanges, "Operator", standaloneMassSpectrum.getOperator(), offset);
offset = addHeaderLine(builder, styleRanges, "Plate", standaloneMassSpectrum.getPlate(), offset);
offset = addHeaderLine(builder, styleRanges, "Position", standaloneMassSpectrum.getPosition(), offset);
if(standaloneMassSpectrum.getDate() != null) {
addHeaderLine(builder, "Date", ValueFormat.getDateFormatEnglish().format(standaloneMassSpectrum.getDate()));
offset = addHeaderLine(builder, styleRanges, "Date", ValueFormat.getDateFormatEnglish().format(standaloneMassSpectrum.getDate()), offset);
}
}
}

text.setText(builder.toString());
styledText.setText(builder.toString());
styledText.setStyleRanges(styleRanges.toArray(new StyleRange[styleRanges.size()]));
}

private void addHeaderLine(StringBuilder builder, String key, String value) {
private int addHeaderLine(StringBuilder builder, List<StyleRange> styleRanges, String key, String value, int offset) {

if(value == null) {
return offset;
}

builder.append(key);
builder.append(": ");
builder.append(value);
builder.append("\n");
builder.append(System.lineSeparator());

StyleRange styleRange = new StyleRange();
styleRange.start = offset;
styleRange.length = key.length();
styleRange.fontStyle = SWT.BOLD;
styleRanges.add(styleRange);

return offset + key.length() + 2 + value.length() + System.lineSeparator().length();
}

private void createControl() {

setLayout(new FillLayout());
text = new Text(this, SWT.BORDER | SWT.MULTI | SWT.V_SCROLL | SWT.H_SCROLL);
styledText = new StyledText(this, SWT.BORDER | SWT.MULTI | SWT.V_SCROLL | SWT.H_SCROLL);
}
}