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@ebi-gene-expression-group

EBI Gene Expression Group

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  1. anatomogram anatomogram Public

    Anatomogram illustrating Expression Atlas experiments

    JavaScript 42 20

  2. scanpy-scripts scanpy-scripts Public

    Scripts for using scanpy

    Python 33 13

  3. atlas atlas Public archive

    Expression Atlas

    Java 26 5

  4. r-seurat-scripts r-seurat-scripts Public

    Scripts to install as a Bioconda package for making workflows

    R 18 4

  5. container-galaxy-sc-tertiary container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    Python 17 14

  6. scxa-workflows scxa-workflows Public

    Higher level repo for aggregating all of Atlas workflow logic for Single Cell

    Shell 14 2

Repositories

Showing 10 of 186 repositories
  • PoC-projects Public

    Container for Proof of Concepts (PoC) projects that might be used later by our team

    ebi-gene-expression-group/PoC-projects’s past year of commit activity
    Java 0 Apache-2.0 0 0 0 Updated Feb 24, 2025
  • atlas-components Public

    Front end components of Expression Atlas and Single Cell Expression Atlas

    ebi-gene-expression-group/atlas-components’s past year of commit activity
    JavaScript 3 3 13 4 Updated Feb 24, 2025
  • bioconductor-ExpressionAtlas Public

    Download datasets from EMBL-EBI Expression Atlas

    ebi-gene-expression-group/bioconductor-ExpressionAtlas’s past year of commit activity
    R 0 1 1 1 Updated Feb 21, 2025
  • scxa-tertiary-workflow Public

    Tertiary component for SCXA workflows

    ebi-gene-expression-group/scxa-tertiary-workflow’s past year of commit activity
    Nextflow 1 0 8 (1 issue needs help) 1 Updated Feb 21, 2025
  • galaxy-gxa-tools-setup Public

    Standard tool installation for GXA Galaxy instances

    ebi-gene-expression-group/galaxy-gxa-tools-setup’s past year of commit activity
    Python 0 2 0 0 Updated Feb 20, 2025
  • container-galaxy-sc-tertiary Public

    Galaxy container for single cell RNA-Seq tertiary analysis tools

    ebi-gene-expression-group/container-galaxy-sc-tertiary’s past year of commit activity
    Python 17 MIT 14 26 13 Updated Feb 19, 2025
  • scxa-bundle-workflow Public

    Workflow for making bundles for Single-cell Expression Atlas

    ebi-gene-expression-group/scxa-bundle-workflow’s past year of commit activity
    Nextflow 0 0 2 1 Updated Feb 19, 2025
  • scanpy-scripts Public

    Scripts for using scanpy

    ebi-gene-expression-group/scanpy-scripts’s past year of commit activity
    Python 33 Apache-2.0 13 12 5 Updated Feb 14, 2025
  • atlas-experiment-fetcher Public

    Fetches and formats GXA experiment data into structured YAML

    ebi-gene-expression-group/atlas-experiment-fetcher’s past year of commit activity
    Python 0 0 1 0 Updated Feb 11, 2025
  • atlas-web-bulk Public

    Bulk Expression Atlas web application

    ebi-gene-expression-group/atlas-web-bulk’s past year of commit activity
    Java 0 Apache-2.0 1 48 5 Updated Jan 29, 2025
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