{lang}[GCCcore/12.3.0,GCCcore/13.2.0,GCCcore/13.3.0] Java v17.0.6 #22245

casparvl · 2025-01-31T00:23:03Z

(created using eb --new-pr)

Depends on Restructure RPATH and elf interpreter setting for Java, and add the LIBRARY_PATH to the additional RPATH easybuild-easyblocks#3571

Java has traditionally been at the GCCcore level. However, many of the libraries in $EBROOTJAVA/lib have dependencies, e.g. on X11 libraries and libasound.so (from alsa-lib). Traditionally, this was 'solved' by adding those dependencies at the level of the actual Java application. E.g. https://github.com/easybuilders/easybuild-easyconfigs/blob/b870488de2fce85aa79e759a72e5e97e8b8908f1/easybuild/easyconfigs/m/MATSim/MATSim-15.0-GCCcore-12.3.0-Java-17.eb

When using LD_LIBRARY_PATH, this is not a huge deal, and the advantage is that we can keep Java at SYSTEM toolchain level, thus avoiding some duplication. But when using RPATH support, it is problematic. The libraries that need to get an RPATH set are in the Java installation. However, the paths that need to be added to these RPATHs are not available when installing Java, because we only add those dependencies at the Java application level. Thus, we cannot 'fix' the RPATHs.

The solution is simple:

The Java EasyConfigs need to get the proper dependencies defined that are needed for the libraries that are installed as part of Java (this PR).
The Java EasyBlock (or actually the Binary easyblock) should add the proper paths to the RPATHs of the relevant libraries, when RPATH support is used. (PR: Restructure RPATH and elf interpreter setting for Java, and add the LIBRARY_PATH to the additional RPATH easybuild-easyblocks#3571)

…e-13.2.0.eb, Java-17.0.6-GCCcore-13.3.0.eb

github-actions · 2025-01-31T00:24:26Z

Updated software `Java-17.0.6-GCCcore-12.3.0.eb`

Diff against Java-17.0.6-GCCcore-13.3.0.eb

easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb

diff --git a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb
index bcf1724226..a8bb80c88a 100644
--- a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb
+++ b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb
@@ -6,7 +6,7 @@ homepage = 'http://openjdk.java.net'
 description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy
 Java applications on desktops and servers."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 
 local_tarball_tmpl = 'OpenJDK%%(version_major)sU-jdk_%s_linux_hotspot_%%(version)s_%s.tar.gz'
 
@@ -28,8 +28,8 @@ checksums = [
 ]
 
 dependencies = [
-    ('X11', '20240607'),
-    ('alsa-lib', '1.2.11'),
+    ('X11', '20230603'),
+    ('alsa-lib', '1.2.9'),
 ]

Diff against Java-17.0.6-GCCcore-13.2.0.eb

easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb

diff --git a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb
index dc1d580861..a8bb80c88a 100644
--- a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb
+++ b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb
@@ -6,7 +6,7 @@ homepage = 'http://openjdk.java.net'
 description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy
 Java applications on desktops and servers."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 
 local_tarball_tmpl = 'OpenJDK%%(version_major)sU-jdk_%s_linux_hotspot_%%(version)s_%s.tar.gz'
 
@@ -28,8 +28,9 @@ checksums = [
 ]
 
 dependencies = [
-    ('X11', '20231019'),
-    ('alsa-lib', '1.2.11'),
+    ('X11', '20230603'),
+    ('alsa-lib', '1.2.9'),
 ]
 
+
 moduleclass = 'lang'

Diff against Java-21.0.5.eb

easybuild/easyconfigs/j/Java/Java-21.0.5.eb

diff --git a/easybuild/easyconfigs/j/Java/Java-21.0.5.eb b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb
index 932318fd33..a8bb80c88a 100644
--- a/easybuild/easyconfigs/j/Java/Java-21.0.5.eb
+++ b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb
@@ -1,12 +1,12 @@
 name = 'Java'
-version = '21.0.5'
-local_build = '11'
+version = '17.0.6'
+local_build = '10'
 
-homepage = 'https://openjdk.org'
+homepage = 'http://openjdk.java.net'
 description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy
 Java applications on desktops and servers."""
 
-toolchain = SYSTEM
+toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
 
 local_tarball_tmpl = 'OpenJDK%%(version_major)sU-jdk_%s_linux_hotspot_%%(version)s_%s.tar.gz'
 
@@ -19,14 +19,18 @@ sources = [local_tarball_tmpl % ('%(jdkarch)s', local_build)]
 checksums = [
     {
         local_tarball_tmpl % ('x64', local_build):
-            '3c654d98404c073b8a7e66bffb27f4ae3e7ede47d13284c132d40a83144bfd8c',
+            'a0b1b9dd809d51a438f5fa08918f9aca7b2135721097f0858cf29f77a35d4289',
         local_tarball_tmpl % ('aarch64', local_build):
-            '6482639ed9fd22aa2e704cc366848b1b3e1586d2bf1213869c43e80bca58fe5c',
+            '9e0e88bbd9fa662567d0c1e22d469268c68ac078e9e5fe5a7244f56fec71f55f',
         local_tarball_tmpl % ('ppc64le', local_build):
-            '3c6f4c358facfb6c19d90faf02bfe0fc7512d6b0e80ac18146bbd7e0d01deeef',
-        local_tarball_tmpl % ('riscv64', local_build):
-            '2f1b3e401e36de803398dfb9818861f9f14ca8ae7db650ea0946ab048fefe3b9',
+            'cb772c3fdf3f9fed56f23a37472acf2b80de20a7113fe09933891c6ef0ecde95',
     }
 ]
 
+dependencies = [
+    ('X11', '20230603'),
+    ('alsa-lib', '1.2.9'),
+]
+
+
 moduleclass = 'lang'

Updated software `Java-17.0.6-GCCcore-13.2.0.eb`

Diff against Java-17.0.6-GCCcore-13.3.0.eb

easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb

diff --git a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb
index bcf1724226..dc1d580861 100644
--- a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb
+++ b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb
@@ -6,7 +6,7 @@ homepage = 'http://openjdk.java.net'
 description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy
 Java applications on desktops and servers."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 local_tarball_tmpl = 'OpenJDK%%(version_major)sU-jdk_%s_linux_hotspot_%%(version)s_%s.tar.gz'
 
@@ -28,9 +28,8 @@ checksums = [
 ]
 
 dependencies = [
-    ('X11', '20240607'),
+    ('X11', '20231019'),
     ('alsa-lib', '1.2.11'),
 ]
 
-
 moduleclass = 'lang'

Diff against Java-17.0.6-GCCcore-12.3.0.eb

easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb
index a8bb80c88a..dc1d580861 100644
--- a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb
@@ -6,7 +6,7 @@ homepage = 'http://openjdk.java.net'
 description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy
 Java applications on desktops and servers."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 local_tarball_tmpl = 'OpenJDK%%(version_major)sU-jdk_%s_linux_hotspot_%%(version)s_%s.tar.gz'
 
@@ -28,9 +28,8 @@ checksums = [
 ]
 
 dependencies = [
-    ('X11', '20230603'),
-    ('alsa-lib', '1.2.9'),
+    ('X11', '20231019'),
+    ('alsa-lib', '1.2.11'),
 ]
 
-
 moduleclass = 'lang'

Diff against Java-21.0.5.eb

easybuild/easyconfigs/j/Java/Java-21.0.5.eb

diff --git a/easybuild/easyconfigs/j/Java/Java-21.0.5.eb b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb
index 932318fd33..dc1d580861 100644
--- a/easybuild/easyconfigs/j/Java/Java-21.0.5.eb
+++ b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb
@@ -1,12 +1,12 @@
 name = 'Java'
-version = '21.0.5'
-local_build = '11'
+version = '17.0.6'
+local_build = '10'
 
-homepage = 'https://openjdk.org'
+homepage = 'http://openjdk.java.net'
 description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy
 Java applications on desktops and servers."""
 
-toolchain = SYSTEM
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
 
 local_tarball_tmpl = 'OpenJDK%%(version_major)sU-jdk_%s_linux_hotspot_%%(version)s_%s.tar.gz'
 
@@ -19,14 +19,17 @@ sources = [local_tarball_tmpl % ('%(jdkarch)s', local_build)]
 checksums = [
     {
         local_tarball_tmpl % ('x64', local_build):
-            '3c654d98404c073b8a7e66bffb27f4ae3e7ede47d13284c132d40a83144bfd8c',
+            'a0b1b9dd809d51a438f5fa08918f9aca7b2135721097f0858cf29f77a35d4289',
         local_tarball_tmpl % ('aarch64', local_build):
-            '6482639ed9fd22aa2e704cc366848b1b3e1586d2bf1213869c43e80bca58fe5c',
+            '9e0e88bbd9fa662567d0c1e22d469268c68ac078e9e5fe5a7244f56fec71f55f',
         local_tarball_tmpl % ('ppc64le', local_build):
-            '3c6f4c358facfb6c19d90faf02bfe0fc7512d6b0e80ac18146bbd7e0d01deeef',
-        local_tarball_tmpl % ('riscv64', local_build):
-            '2f1b3e401e36de803398dfb9818861f9f14ca8ae7db650ea0946ab048fefe3b9',
+            'cb772c3fdf3f9fed56f23a37472acf2b80de20a7113fe09933891c6ef0ecde95',
     }
 ]
 
+dependencies = [
+    ('X11', '20231019'),
+    ('alsa-lib', '1.2.11'),
+]
+
 moduleclass = 'lang'

Updated software `Java-17.0.6-GCCcore-13.3.0.eb`

Diff against Java-17.0.6-GCCcore-13.2.0.eb

easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb

diff --git a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb
index dc1d580861..bcf1724226 100644
--- a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.2.0.eb
+++ b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb
@@ -6,7 +6,7 @@ homepage = 'http://openjdk.java.net'
 description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy
 Java applications on desktops and servers."""
 
-toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 local_tarball_tmpl = 'OpenJDK%%(version_major)sU-jdk_%s_linux_hotspot_%%(version)s_%s.tar.gz'
 
@@ -28,8 +28,9 @@ checksums = [
 ]
 
 dependencies = [
-    ('X11', '20231019'),
+    ('X11', '20240607'),
     ('alsa-lib', '1.2.11'),
 ]
 
+
 moduleclass = 'lang'

Diff against Java-17.0.6-GCCcore-12.3.0.eb

easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb

diff --git a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb
index a8bb80c88a..bcf1724226 100644
--- a/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-12.3.0.eb
+++ b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb
@@ -6,7 +6,7 @@ homepage = 'http://openjdk.java.net'
 description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy
 Java applications on desktops and servers."""
 
-toolchain = {'name': 'GCCcore', 'version': '12.3.0'}
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 local_tarball_tmpl = 'OpenJDK%%(version_major)sU-jdk_%s_linux_hotspot_%%(version)s_%s.tar.gz'
 
@@ -28,8 +28,8 @@ checksums = [
 ]
 
 dependencies = [
-    ('X11', '20230603'),
-    ('alsa-lib', '1.2.9'),
+    ('X11', '20240607'),
+    ('alsa-lib', '1.2.11'),
 ]

Diff against Java-21.0.5.eb

easybuild/easyconfigs/j/Java/Java-21.0.5.eb

diff --git a/easybuild/easyconfigs/j/Java/Java-21.0.5.eb b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb
index 932318fd33..bcf1724226 100644
--- a/easybuild/easyconfigs/j/Java/Java-21.0.5.eb
+++ b/easybuild/easyconfigs/j/Java/Java-17.0.6-GCCcore-13.3.0.eb
@@ -1,12 +1,12 @@
 name = 'Java'
-version = '21.0.5'
-local_build = '11'
+version = '17.0.6'
+local_build = '10'
 
-homepage = 'https://openjdk.org'
+homepage = 'http://openjdk.java.net'
 description = """Java Platform, Standard Edition (Java SE) lets you develop and deploy
 Java applications on desktops and servers."""
 
-toolchain = SYSTEM
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
 
 local_tarball_tmpl = 'OpenJDK%%(version_major)sU-jdk_%s_linux_hotspot_%%(version)s_%s.tar.gz'
 
@@ -19,14 +19,18 @@ sources = [local_tarball_tmpl % ('%(jdkarch)s', local_build)]
 checksums = [
     {
         local_tarball_tmpl % ('x64', local_build):
-            '3c654d98404c073b8a7e66bffb27f4ae3e7ede47d13284c132d40a83144bfd8c',
+            'a0b1b9dd809d51a438f5fa08918f9aca7b2135721097f0858cf29f77a35d4289',
         local_tarball_tmpl % ('aarch64', local_build):
-            '6482639ed9fd22aa2e704cc366848b1b3e1586d2bf1213869c43e80bca58fe5c',
+            '9e0e88bbd9fa662567d0c1e22d469268c68ac078e9e5fe5a7244f56fec71f55f',
         local_tarball_tmpl % ('ppc64le', local_build):
-            '3c6f4c358facfb6c19d90faf02bfe0fc7512d6b0e80ac18146bbd7e0d01deeef',
-        local_tarball_tmpl % ('riscv64', local_build):
-            '2f1b3e401e36de803398dfb9818861f9f14ca8ae7db650ea0946ab048fefe3b9',
+            'cb772c3fdf3f9fed56f23a37472acf2b80de20a7113fe09933891c6ef0ecde95',
     }
 ]
 
+dependencies = [
+    ('X11', '20240607'),
+    ('alsa-lib', '1.2.11'),
+]
+
+
 moduleclass = 'lang'

casparvl · 2025-01-31T01:21:59Z

Test report by @casparvl
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3571
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
tcn1.local.snellius.surf.nl - Linux RHEL 9.4 (Plow), x86_64, AMD EPYC 7H12 64-Core Processor (zen2), Python 3.11.4
See https://gist.github.com/casparvl/c2a1ef7871f69a2e47c38e0c8af9752a for a full test report.

casparvl · 2025-01-31T01:22:20Z

@boegelbot please test @ jsc-zen3
EB_ARGS="--include-easyblocks-from-pr 3571"

boegelbot · 2025-01-31T01:30:09Z

@casparvl: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22245 EB_ARGS="--include-easyblocks-from-pr 3571" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22245 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5647

Test results coming soon (I hope)...

- notification for comment with ID 2626078779 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-01-31T01:32:07Z

Test report by @boegelbot
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3571
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/02a24dbbe2db8d0b8916247e7b9221ce for a full test report.

adding easyconfigs: Java-17.0.6-GCCcore-12.3.0.eb, Java-17.0.6-GCCcor…

7d38250

…e-13.2.0.eb, Java-17.0.6-GCCcore-13.3.0.eb

casparvl added the update label Jan 31, 2025

Fix missing local_build

faeabfc

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{lang}[GCCcore/12.3.0,GCCcore/13.2.0,GCCcore/13.3.0] Java v17.0.6 #22245

{lang}[GCCcore/12.3.0,GCCcore/13.2.0,GCCcore/13.3.0] Java v17.0.6 #22245

casparvl commented Jan 31, 2025 •

edited

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github-actions bot commented Jan 31, 2025 •

edited

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casparvl commented Jan 31, 2025

casparvl commented Jan 31, 2025

boegelbot commented Jan 31, 2025

boegelbot commented Jan 31, 2025

{lang}[GCCcore/12.3.0,GCCcore/13.2.0,GCCcore/13.3.0] Java v17.0.6 #22245

Are you sure you want to change the base?

{lang}[GCCcore/12.3.0,GCCcore/13.2.0,GCCcore/13.3.0] Java v17.0.6 #22245

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casparvl commented Jan 31, 2025 • edited Loading

github-actions bot commented Jan 31, 2025 • edited Loading

Updated software Java-17.0.6-GCCcore-12.3.0.eb

Updated software Java-17.0.6-GCCcore-13.2.0.eb

Updated software Java-17.0.6-GCCcore-13.3.0.eb

casparvl commented Jan 31, 2025

casparvl commented Jan 31, 2025

boegelbot commented Jan 31, 2025

boegelbot commented Jan 31, 2025

casparvl commented Jan 31, 2025 •

edited

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edited

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Updated software `Java-17.0.6-GCCcore-12.3.0.eb`

Updated software `Java-17.0.6-GCCcore-13.2.0.eb`

Updated software `Java-17.0.6-GCCcore-13.3.0.eb`