Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

{lib}[foss/2021b] DeepLabCut v2.3.1 w/ Python 3.9.6 #17551

Closed
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Original file line number Diff line number Diff line change
@@ -0,0 +1,82 @@
# Loosely based on PR #7680
# J. Sassmannshausen (Imperial College London/UK)

easyblock = 'PythonBundle'

name = 'DeepLabCut'
version = '2.3.1'
versionsuffix = '-CUDA-%(cudaver)s'
local_version = '%(versionsuffix)s-contrib'

homepage = 'http://www.mousemotorlab.org/deeplabcut'
description = "Markerless tracking of user-defined features with deep learning"

toolchain = {'name': 'foss', 'version': '2021b'}
toolchainopts = {'pic': True}

builddependencies = [
('pkgconf', '1.8.0'),
]

dependencies = [
('CUDA', '11.4.1', '', SYSTEM),
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Bump to 11.5.2?

('cuDNN', '8.2.2.26', '-CUDA-%(cudaver)s', SYSTEM),
('Python', '3.9.6'),
('h5py', '3.6.0'),
('IPython', '7.26.0'),
('scikit-learn', '1.0.2'),
('scikit-image', '0.19.1'),
('TensorFlow', '2.7.1', versionsuffix),
('PyYAML', '5.4.1'),
('wxPython', '4.2.0'),
('OpenCV', '4.5.5', local_version),
('numba', '0.54.1'),
('libyaml', '0.2.5'),
('imgaug', '0.4.0', versionsuffix),
('tqdm', '4.62.3'),
('ruamel.yaml', '0.17.21'),
('statsmodels', '0.13.1'),
('PyTorch', '1.11.0', versionsuffix),
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

bump to 1.12.1, see #17272

('MoviePy', '1.0.3'),
('SciPy-bundle', '2021.10'),
('HDF5', '1.12.1'),
('LZO', '2.10'),
('Blosc', '1.21.1'),
('py-cpuinfo', '9.0.0'),
Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Some of these are dependencies for PyTables, are they also direct dependencies for DeepLabCut itself?

('PyTables', '3.8.0'),
]

sanity_pip_check = True
use_pip = True

exts_list = [
('filterpy', '1.4.5', {
'sources': ['%(name)s-%(version)s.zip'],
'checksums': ['4f2a4d39e4ea601b9ab42b2db08b5918a9538c168cff1c6895ae26646f3d73b1'],
}),
('tensorpack', '0.11', {
'checksums': ['022b610e416e62e3575424cd08e60af27808a5fb6914294615391caf582cbd4f'],
}),
('tf_slim', '1.1.0', {
'source_urls': ['https://github.com/google-research/tf-slim/archive'],
'sources': ['v%(version)s.tar.gz'],
'checksums': ['964cde4b7728a408dcd5c841ab6b93d95137ab4b60db28b10400f86286bfeb8b'],
}),
('msgpack-numpy', '0.4.8', {
'sources': ['msgpack-numpy-0.4.8.tar.gz'],
'checksums': ['c667d3180513422f9c7545be5eec5d296dcbb357e06f72ed39cc683797556e69'],
}),
('dlclibrary', '0.0.2', {
'checksums': ['f6f27b4586b5adf70cc87f0020f41171d6e08cd85697d5cef71e51e100fe0542'],
}),
('huggingface-hub', '0.13.2', {
'sources': ['huggingface_hub-%(version)s.tar.gz'],
'checksums': ['246e8eb39b6e6e9d9d5846e4b56c265cdf1872f48ba5a13a1321295d371626f5'],
}),
(name, version, {
'source_tmpl': '%(namelower)s-%(version)s.tar.gz',
'checksums': ['f514b9c6c067244d6fc6644f474a69045a707db5d65c3a0d63b90ca08e0c7cda'],
}),
]

moduleclass = 'lib'