{data}[foss/2022a] PyTables v3.8.0

easybuild/easyconfigs/p/PyTables/PyTables-3.8.0-fix-libs.patch

@@ -0,0 +1,15 @@
+# pyTables expects that LIBS is a list of library names and will add
+# a -l by itself.
+# original patch by [email protected], ported to PyTables 3.5.2 by Kenneth Hoste (HPC-UGent)
+--- PyTables-3.8.0/setup.py.orig	2019-08-23 10:35:55.467589283 +0200
++++ PyTables-3.8.0/setup.py	2019-08-23 10:36:39.408195074 +0200
+@@ -576,6 +576,9 @@
+     # is not a good idea.
+     CFLAGS = os.environ.get("CFLAGS", "").split()
+     LIBS = os.environ.get("LIBS", "").split()
++    for idx, lib in enumerate(LIBS):
++        if lib.startswith("-l"):
++            LIBS[idx] = lib.replace("-l", "")
+     CONDA_PREFIX = os.environ.get("CONDA_PREFIX", "")
+     # We start using pkg-config since some distributions are putting HDF5
+     # (and possibly other libraries) in exotic locations.  See issue #442.

easybuild/easyconfigs/p/PyTables/PyTables-3.8.0-foss-2022a.eb

@@ -0,0 +1,68 @@
+# http://www.pytables.org/usersguide/installation.html
+# updated: Denis Kristak (INUITS)
+
+easyblock = 'PythonBundle'
+
+name = 'PyTables'
+version = '3.8.0'
+
+homepage = 'https://www.pytables.org'
+description = """PyTables is a package for managing hierarchical datasets and designed to efficiently and easily cope
+ with extremely large amounts of data. PyTables is built on top of the HDF5 library, using the Python language and the
+ NumPy package. It features an object-oriented interface that, combined with C extensions for the performance-critical
+ parts of the code (generated using Cython), makes it a fast, yet extremely easy to use tool for interactively browse,
+ process and search very large amounts of data. One important feature of PyTables is that it optimizes memory and disk
+ resources so that data takes much less space (specially if on-flight compression is used) than other solutions such as
+ relational or object oriented databases."""
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+toolchainopts = {'usempi': True}
+
+dependencies = [
+    ('Python', '3.10.4'),
+    ('SciPy-bundle', '2022.05'),  # provides numexpr
+    ('HDF5', '1.12.2'),
+    ('LZO', '2.10'),
+    ('Blosc', '1.21.3'),
+    ('scikit-build', '0.15.0'),
+]
+
+builddependencies = [
+    ('CMake', '3.23.1'),
+]
+
+use_pip = True
+
+exts_list = [
+    ('py-cpuinfo', '9.0.0', {
+        'modulename': 'cpuinfo',
+        'checksums': ['3cdbbf3fac90dc6f118bfd64384f309edeadd902d7c8fb17f02ffa1fc3f49690'],
+    }),
+    ('blosc2', '2.0.0', {
+        'checksums': ['f19b0b3674f6c825b490f00d8264b0c540c2cdc11ec7e81178d38b83c57790a1'],
+    }),
+    (name, version, {
+        'modulename': 'tables',
+        'patches': ['%(name)s-%(version)s-fix-libs.patch'],
+        'source_urls': ['https://github.com/PyTables/PyTables/archive/'],
+        'sources': ['v%(version)s.tar.gz'],
+        'checksums': [
+            {'v3.8.0.tar.gz': '652b56b3d355797af4337a4493acfa4c4de4a60e7c6663cc6ce44d8ee477e920'},
+            {'PyTables-3.8.0-fix-libs.patch': '740d87c753c22e70aaa2720a50de1b729bc110360b7e44f40b0fb0c4a5b14c6c'},
+        ],
+    }),
+]
+
+sanity_pip_check = True
+
+local_bins = ['pt2to3', 'ptdump', 'ptrepack', 'pttree']
+sanity_check_paths = {
+    'files': ['bin/%s' % x for x in local_bins],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+options = {'modulename': 'tables'}
+
+sanity_check_commands = ["%s --help" % x for x in local_bins]
+
+moduleclass = 'data'