{data}[foss/2022a] scib v1.1.1, scikit-misc v0.1.4, pydot v1.4.2, Deprecated v1.2.13 w/ Python 3.10.4

easybuild/easyconfigs/d/Deprecated/Deprecated-1.2.13-foss-2022a.eb

@@ -0,0 +1,29 @@
+# author: Denis Kristak (INUITS)
+easyblock = 'PythonBundle'
+
+name = 'Deprecated'
+version = '1.2.13'
+
+homepage = 'https://github.com/tantale/deprecated'
+description = "If you need to mark a function or a method as deprecated, you can use the @deprecated decorator."
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+dependencies = [
+    ('Python', '3.10.4'),
+]
+
+
+use_pip = True
+sanity_pip_check = True
+
+exts_list = [
+    ('wrapt', '1.12.1', {
+        'checksums': ['b62ffa81fb85f4332a4f609cab4ac40709470da05643a082ec1eb88e6d9b97d7'],
+    }),
+    (name, version, {
+        'checksums': ['43ac5335da90c31c24ba028af536a91d41d53f9e6901ddb021bcc572ce44e38d'],
+    }),
+]
+
+moduleclass = 'tools'

easybuild/easyconfigs/p/pydot/pydot-1.4.2-GCCcore-11.3.0.eb

@@ -0,0 +1,26 @@
+# updated: Denis Kristak (INUITS)
+easyblock = 'PythonPackage'
+
+name = 'pydot'
+version = '1.4.2'
+
+homepage = 'https://github.com/pydot/pydot'
+description = "Python interface to Graphviz's Dot language."
+
+toolchain = {'name': 'GCCcore', 'version': '11.3.0'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['248081a39bcb56784deb018977e428605c1c758f10897a339fce1dd728ff007d']
+
+builddependencies = [('binutils', '2.38')]
+
+dependencies = [
+    ('Python', '3.10.4'),
+    ('Graphviz', '5.0.0'),
+]
+
+use_pip = True
+download_dep_fail = True
+sanity_pip_check = True
+
+moduleclass = 'vis'

easybuild/easyconfigs/s/scib/scib-1.1.1-foss-2022a.eb

@@ -0,0 +1,39 @@
+# author: Denis Kristak (INUITS)
+easyblock = 'PythonPackage'
+
+name = 'scib'
+version = '1.1.1'
+
+homepage = 'https://github.com/theislab/scib'
+description = "Benchmarking atlas-level data integration in single-cell genomics."
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['84bcebe08c956b86d887ab60a3efaa783aa56113d523d953f6c4fff40f9dc58a']
+
+dependencies = [
+    ('Python', '3.10.4'),
+    ('SciPy-bundle', '2022.05'),
+    ('Seaborn', '0.12.1'),
+    ('numba', '0.56.4'),
+    ('scanpy', '1.9.1'),
+    ('h5py', '3.7.0'),
+    ('scikit-learn', '1.1.2'),
+    ('scikit-misc', '0.1.4'),
+    ('leidenalg', '0.9.1'),
+    ('umap-learn', '0.5.3'),
+    ('pydot', '1.4.2'),
+    ('igraph', '0.10.3'),
+    ('python-igraph', '0.10.3'),
+    ('Deprecated', '1.2.13'),
+]
+
+use_pip = True
+sanity_pip_check = True
+download_dep_fail = True
+
+preinstallopts = "sed -i 's|igraph>=0.10|igraph>=0.9.8|g' setup.cfg && "
+preinstallopts += "sed -i 's|louvain>=0.8||g' setup.cfg && "
+
+moduleclass = 'data'

easybuild/easyconfigs/s/scikit-misc/scikit-misc-0.1.4-foss-2022a.eb

@@ -0,0 +1,26 @@
+# updated: Denis Kristak (INUITS)
+easyblock = 'PythonPackage'
+
+name = 'scikit-misc'
+version = '0.1.4'
+
+homepage = 'https://github.com/has2k1/scikit-misc'
+description = "Miscellaneous tools for data analysis and scientific computing"
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['f7746a0347811063e1ecf9121df94835785003953c38b5ba84f63fc508c22911']
+
+dependencies = [
+    ('Python', '3.10.4'),
+    ('SciPy-bundle', '2022.05'),
+]
+
+use_pip = True
+download_dep_fail = True
+sanity_pip_check = True
+
+options = {'modulename': 'skmisc'}
+
+moduleclass = 'lib'