Skip to content
@eastgenomics

East Genomics

Bringing together genomic medicine across the East Midlands and East of England

Popular repositories Loading

  1. eggd_tso500 eggd_tso500 Public

    Runs the Illumina TSO500 local analysis app.

    Shell 5 2

  2. eggd_mosdepth eggd_mosdepth Public

    mosdepth (DNAnexus Platform App)

    Shell 4

  3. athena athena Public

    Provides HTML reports with detailed coverage analysis for clinical NGS data.

    HTML 4 2

  4. Ploutos Ploutos Public archive

    Code for the DNAnexus billing project.

    Python 4

  5. eggd_staraligner eggd_staraligner Public

    Shell 4

  6. eggd_generate_variant_workbook eggd_generate_variant_workbook Public

    DNAnexus app for generating xlsx variant workbooks

    Python 3

Repositories

Showing 10 of 243 repositories
  • ici_reports_export Public

    Fetches information from completed ICI reports, reformats and deposits to local storage

    eastgenomics/ici_reports_export’s past year of commit activity
    0 MIT 0 1 1 Updated Feb 19, 2025
  • themis Public

    Code for internal bioinformatics team auditing

    eastgenomics/themis’s past year of commit activity
    Python 3 MIT 0 2 1 Updated Feb 19, 2025
  • eggd_conductor_configs Public

    Repository of eggd_conductor app and assay config files

    eastgenomics/eggd_conductor_configs’s past year of commit activity
    0 0 2 0 Updated Feb 19, 2025
  • automated-archiving Public

    Python script to monitor archiving on DNANexus

    eastgenomics/automated-archiving’s past year of commit activity
    Python 2 0 4 0 Updated Feb 19, 2025
  • egg4_dias_TWE_config Public

    Config for the Dias TWE assay

    eastgenomics/egg4_dias_TWE_config’s past year of commit activity
    1 0 0 0 Updated Feb 19, 2025
  • eggd_vep_CEN_config Public

    Json configuration file for the implementation of VEP for the CEN assay.

    eastgenomics/eggd_vep_CEN_config’s past year of commit activity
    1 MIT 0 1 0 Updated Feb 19, 2025
  • eggd_vcf_handler_for_uranus Public archive
    eastgenomics/eggd_vcf_handler_for_uranus’s past year of commit activity
    Python 1 0 1 0 Updated Feb 18, 2025
  • eggd_TSO500_reports_workflow Public
    eastgenomics/eggd_TSO500_reports_workflow’s past year of commit activity
    Shell 1 0 0 0 Updated Feb 18, 2025
  • Haemonc_requests Public
    eastgenomics/Haemonc_requests’s past year of commit activity
    Python 1 0 1 0 Updated Feb 18, 2025
  • eggd_vep_helios_config Public
    eastgenomics/eggd_vep_helios_config’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 18, 2025
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…